YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68370438, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDGLPSVNY SNDSKRATVD LNVSEQWLVG MGILMGLIVF VIVVGNILVI VAIARNQRLQ  60
   61 TLTNVFIVSL ACADLIMGLL VVPFGAALEV RGAWMYGSFF CEFWISLDVL CVTASIETLC 120
  121 VIAIDRYIAI ISPFRYQSLL TKARAKVVVC AVWAISALVS FPPILMHWSQ DSEETSCYEN 180
  181 PECCDFVTNR AYAISSSIIS FYIPLIVMIF VYARVYREAK QQLNKINKCE GRFYNNHGTN 240
  241 CKPTRKRTTK ILALKEQKAL KTLGIIMGTF TLCWLPFFIV NVVRVFCAQV VDKELFVFLN 300
  301 WLGYVNSAFN PIIYCRSPDF RKAFKRLLCC PRQADRRLHV SSCDLSRCTG GFGNSMEQSM 360
  361 LGTWSDCNGA DSSDCSLERN GRMSHSESQL

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.95
Transmembrane Helix	31	53	0.92
Cytoplasmic	54	64	0.80
Transmembrane Helix	65	87	0.92
Non-Cytoplasmic	88	103	0.90
Transmembrane Helix	104	124	0.93
Cytoplasmic	125	144	0.85
Transmembrane Helix	145	166	0.90
Non-Cytoplasmic	167	193	0.94
Transmembrane Helix	194	216	0.87
Cytoplasmic	217	259	0.99
Transmembrane Helix	260	280	0.88
Non-Cytoplasmic	281	296	0.75
Transmembrane Helix	297	315	0.76
Cytoplasmic	316	390	0.79