YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68370060
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVEAEKLEL EELDKTLLNR DKPKPQSKYE RIFQPCIAEL VGTTFFVFIG CVSVIENVEA  60
   61 AGRLQPALVH GLAVAVLVAC MAEISGSHFN PPFTIAIWLC GGMQLTMVVP YLISQLIGGV 120
  121 LGAAMSKVMT SDENYANATG AAFAVLKSDE QLGKVVFAEM AMTCLVTLVV LMGAVNGKSK 180
  181 SPMVPFMVGC TVIVNILAGG DVSGTCLNPA RAFGPALMAN HWTYHWVYWV GPLGGGLVAA 240
  241 ALMRLLLGDE KLRVVMK

Type	Start	End	Confidence
Cytoplasmic	1	35	0.91
Transmembrane Helix	36	55	0.89
Non-Cytoplasmic	56	66	0.71
Transmembrane Helix	67	86	0.92
Cytoplasmic	87	94	0.73
Transmembrane Helix	95	117	0.83
Non-Cytoplasmic	118	154	0.87
Transmembrane Helix	155	175	0.92
Cytoplasmic	176	183	0.81
Transmembrane Helix	184	205	0.88
Non-Cytoplasmic	206	224	0.91
Transmembrane Helix	225	247	0.93
Cytoplasmic	248	257	0.95