YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|192453560, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQTVLDSQ TMAENDSRSN QTCDVFIYKE SARILFPLFY CLIFVISVAG NSLVLCITCQ  60
   61 KRQKMNSTTI YLINLAISDA LFTLALPGRI TYYIRGFDWP FGDFLCRLTA MIFYSNTYVS 120
  121 IAFMTCISVD RYLAMLHRQR CQRLRKTKVV KAVCVLVWVV VLLETSPLLF KSIMENRPGH 180
  181 RTCMEFSNFD SKRMAYVLLF ACVIGFFMPL GLILCSYSRV SCKLYKTAKE NPLTNKSGGH 240
  241 TRAKNMILLI LLSFVVCFSP YHINIMQFVV RRLYHEPSCE ELKALKLSLQ VTVAMMNLNS 300
  301 CLDPIIYFFA IRTYKQRVMS LFKSYISISA ASKSLQDNSS SNT

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.95
Transmembrane Helix	36	58	0.91
Cytoplasmic	59	69	0.85
Transmembrane Helix	70	91	0.91
Non-Cytoplasmic	92	109	0.87
Transmembrane Helix	110	129	0.92
Cytoplasmic	130	148	0.86
Transmembrane Helix	149	170	0.90
Non-Cytoplasmic	171	193	0.96
Transmembrane Helix	194	217	0.91
Cytoplasmic	218	245	0.93
Transmembrane Helix	246	265	0.92
Non-Cytoplasmic	266	292	0.91
Transmembrane Helix	293	311	0.54
Cytoplasmic	312	343	0.56