YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|133777837, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTEGPDFY VPMSNESGVV RSPYEYPQYY LASPFAFYCM AAYMLFLIVT CVPVNGLTLY  60
   61 VTIENKKLRT PLNYILLNLA VADLFMVFGG FTTTFYTSMH GYFVLGRAGC NLEGLFATVG 120
  121 GEIALWSLVV LAVERWVVVC KPFTKFRFSQ LHATLGVAFS WSMACSCAIP PLLGWSRYIP 180
  181 EGLQCSCGVD YYTPNPETEN ESFVIYMFVV HFSIPLTIIS FCYGRLLCTV KVAAAQQQES 240
  241 ETTQRAEREV TRMVILMVIA FLICWLPYAS VAWYIFTHQG SQFGPVFMTV PAFFAKSSAL 300
  301 YNPLIYVFMN KQFRHSMMMT VCCGKDPFQD EEEGSSSSKS KTETSSVSSS SASSA

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.93
Transmembrane Helix	39	61	0.88
Cytoplasmic	62	73	0.87
Transmembrane Helix	74	96	0.91
Non-Cytoplasmic	97	114	0.87
Transmembrane Helix	115	138	0.83
Cytoplasmic	139	150	0.90
Transmembrane Helix	151	173	0.91
Non-Cytoplasmic	174	203	0.96
Transmembrane Helix	204	227	0.84
Cytoplasmic	228	252	0.90
Transmembrane Helix	253	276	0.88
Non-Cytoplasmic	277	286	0.87
Transmembrane Helix	287	309	0.86
Cytoplasmic	310	355	0.97