YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68366574
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.70
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRLLLNPTL LISAMADAAF SFAKDFLAGG VAAAISKTAV APIERVKLLL QVQHASQQIS  60
   61 ADKQYKGIVD CIVRIPKEQG FASFWRGNLA NVIRYFPTQA LNFAFKDKYK QIFLGGVDKH 120
  121 TQFWRYFAGN LASGGAAGAT SLCFVYPLDF ARTRLAADVG KAGSTREFSG LADCLAKIFK 180
  181 SDGLRGLYQG FNVSVQGIII YRAAYFGVYD TAKGMLPDPK NTHIMVSWMI AQTVTAVAGV 240
  241 VSYPFDTVRR RMMMQSGRKG ADIMYTGTLD CWRKIARDEG SKAFFKGALS NVLRGMGGAF 300
  301 VLVLYDEFKN LLMLRQFKCR FALYVSQQRK SPVKCSSREY GARDEAFTRE EAESKAKEEA 360
  361 EKQRIEREKH FQKEEQERLE RKKRLEGIMK RTRKSDAGAQ KDVKTPTQVN GRVTDSVRKN 420
  421 L

Type	Start	End	Confidence
Signal Peptide	1	18	0.95
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	223	0.78
Transmembrane Helix	224	245	0.67
Cytoplasmic	246	290	0.64
Transmembrane Helix	291	305	0.30
Non-Cytoplasmic	306	421	0.59