YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169154956, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERSAVDAFS RGIPSFPSFV KMAGVFSYES SEVDWCEDNY KHSENVVEYF NTMSSFIFFV  60
   61 ISPIMLYLLH PYAKERNLAV HLVWIMMVFV GIFSIYFHMT LSFMGQMLDE LSILWVLAIG 120
  121 YSLWFPRKHF PSFVKDRTSF ARLVLIITII STLSSFVKPT ANAYALNCFA IHILYSLFVE 180
  181 LKSCTDERVL RLAWASIGLW VLAISCWISD RFGCSFWQKL DFCYLHGIWH ILIVMATAYA 240
  241 STLIAYLDAS QEIPYSLPDL QYWPRNNWAI GLPYIVLKGT NTTRKTC

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.76
Transmembrane Helix	49	70	0.86
Cytoplasmic	71	79	0.79
Transmembrane Helix	80	99	0.95
Non-Cytoplasmic	100	106	0.77
Transmembrane Helix	107	125	0.90
Cytoplasmic	126	137	0.86
Transmembrane Helix	138	157	0.90
Non-Cytoplasmic	158	162	0.74
Transmembrane Helix	163	179	0.87
Cytoplasmic	180	189	0.71
Transmembrane Helix	190	209	0.92
Non-Cytoplasmic	210	225	0.77
Transmembrane Helix	226	247	0.91
Cytoplasmic	248	287	0.87