YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|221307519, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	87	0.95
Transmembrane Helix	88	110	0.87
Non-Cytoplasmic	111	118	0.78
Transmembrane Helix	119	139	0.85
Cytoplasmic	140	158	0.84
Transmembrane Helix	159	179	0.71
Non-Cytoplasmic	180	184	0.56
Transmembrane Helix	185	205	0.89
Cytoplasmic	206	219	0.59
Transmembrane Helix	220	243	0.83
Non-Cytoplasmic	244	251	0.60
Transmembrane Helix	252	273	0.91
Cytoplasmic	274	284	0.61
Transmembrane Helix	285	308	0.88
Non-Cytoplasmic	309	320	0.60
Transmembrane Helix	321	340	0.59
Cytoplasmic	341	350	0.57
Transmembrane Helix	351	367	0.34
Non-Cytoplasmic	368	373	0.47
Transmembrane Helix	374	393	0.43
Cytoplasmic	394	426	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHKRPVRA RSDSDSSSSA PRDPIVAATE EGPSLLTRLM ELPVARLSRQ QLKRLEEHRY  60
   61 SSEGRSLLEP FMQGFWCWLV SKVPLWMAPN LITIVGLATN IVSTLILVYY CPTATEQAPT 120
  121 WAYLACALGL FIYQSLDAID GKQARRTNSS TPLGELFDHG CDSLSTVFVV LGTCIAVQLG 180
  181 TYPDWMFFCC FVGIFMFYCA HWQTYVSGTL RFGIIDVTEV QIFIISMYLL AAIGGTAFWQ 240
  241 SMIPVLNIQV KIIPALFTLL GAVFSCTNYF RVIFTGGMGK NGSTIAGTSV LSPSFHIGVV 300
  301 ITLALMIYKK SSVQLFEKHP CLYVLAFGFV SAKLTNRLVV AHMTKSEMHR YDLAFTGPAL 360
  361 LFLNQYFNSF INEYCLLWVA LVLSAFDLVR YCVSVCNQIA THLNIRVFSI QPPSPSRVQT 420
  421 DGRNHH