YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68364364, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQDGEDLSH GKSIWGLKSL RSLGIFMVLL VLCLCYYILP YEFSDTWTST VGLFIKDDNV  60
   61 SLTTPSAVTT QEPWKPPEPY CVAYPGKYHF IVNEPEKCQK ENPFVVLLIP VAPSNKAARD 120
  121 AVRSTWGTEK LVGDKVVTLL FLLGVSTSND SQKLHEDLLK ESEQYHDIVQ SDFWDSYYNL 180
  181 TIKTMIMMEW LTAYCQNTSY VMKVDSDIFL NVKNLVNLLQ SAPKQNYMSG LVARGAVVLR 240
  241 NPNSKWYLPK TTFAPDFYPP YALGLGYVFS IDLSQKLVEA AQLVKPVYIE DVYLGLCMQH 300
  301 LRIGLTNPPN GGLFNVFPVD YNRCRYSKLV ATTTRSLNDQ VVFWKELQKP GPYC

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	40	0.94
Non-Cytoplasmic	41	354	0.98