YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68364150
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVSGLEMQR GADHNDGVRT GKEQFQKAGK EEGPRSGLSS LLIMYVSGLE MQRGADHNDG  60
   61 VRTGKEQFQK AGFTSDCHAK KMQKQVEIRM HENHLDPLPE PEESICGSCC DKLMKNLLLT 120
  121 LTVLGVITGS VAGILLRYAS PLPADVIMVI AFPGDILMRM LKMVILPLII SSLITGLAGL 180
  181 DAKSSGRLGT RAMIYYMSTT VIAAVLGVIL VLLIHPGNPK LKANLGEGKK NDEVSSLDAF 240
  241 FDLIRNLFPE NLVQACFQQI QTVTTKVEIA PPPPPTRFGR NATKGAAKYV IKKSLQFKSG 300
  301 MNVLGIIGFF VAFGICMGKM GEKAKLMVDF FNTLNEIVMR LVGMIMWYSP IGIACLICGK 360
  361 IISINDLEMV AKQLGMYMVT VIVGLIIHGG IFLPLIYFVI VRKNPFKFFM GLFQAWVTAL 420
  421 GTASSAGTLP VTFRCLEENL GIDKRVTRFV LPVGATINMD GTALYEAVAA IFIAQMNGIE 480
  481 LDPGQIVTVS LTATLASVGA ASIPSAGLVT MLLILTAVGL PTQDISLLVA VDWLLDRFRT 540
  541 SVNVIGDSYG AGIVYHLSKD ELDMFDAQQI RPDDFEMAKT QSYYENNSNH GVYHNSCQPI 600
  601 QIDDCKVHFT LTDIETCM

Type	Start	End	Confidence
Cytoplasmic	1	116	0.87
Transmembrane Helix	117	139	0.84
Non-Cytoplasmic	140	159	0.60
Transmembrane Helix	160	180	0.89
Cytoplasmic	181	191	0.57
Transmembrane Helix	192	215	0.90
Non-Cytoplasmic	216	299	0.62
Transmembrane Helix	300	321	0.87
Cytoplasmic	322	340	0.56
Transmembrane Helix	341	364	0.86
Non-Cytoplasmic	365	375	0.55
Transmembrane Helix	376	401	0.86
Cytoplasmic	402	407	0.55
Transmembrane Helix	408	433	0.74
Non-Cytoplasmic	434	490	0.46
Transmembrane Helix	491	520	0.73
Cytoplasmic	521	618	0.69