YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148744703, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQFIRKQLH NHLVERKIRR TRLVTKDGHC NIKFGTTEYQ SHFAFLKDFW TTFVEIHWCF  60
   61 VILLFAAAFT GSWFVFGLLW YSLAKSNGDL SESQQTKCIE NINSLTTAFL YSLETQTTIG 120
  121 YGGRALTGHC PGTVALLIIQ SLMGAIINCF MCGLILAKIS LPKRRAKTVA FSETAVIRLW 180
  181 KGNLCLQIRV ANLRKTLLIG SHIYGKLLRT TITPEGETII LDQVNVDFSV DAGKDNLFFV 240
  241 CPLTIYHVID KSSPFADMAA DNLQLQDFEL VVFLDGTAES TSLSCQVRTS YLPREIKWGY 300
  301 VFLPVISRTK TGKYRIDLSN FSKTQQADTP HCACCFHNKH NKGLILHRHG SEGIDNLGFD 360
  361 VIDLQDSADV TEKGD

Type	Start	End	Confidence
Cytoplasmic	1	55	0.94
Transmembrane Helix	56	80	0.85
Non-Cytoplasmic	81	135	0.92
Transmembrane Helix	136	157	0.94
Cytoplasmic	158	375	0.96