YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68363078
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.91
Transmembrane Helix	31	54	0.91
Cytoplasmic	55	66	0.86
Transmembrane Helix	67	89	0.64
Non-Cytoplasmic	90	97	0.56
Transmembrane Helix	98	118	0.53
Cytoplasmic	119	140	0.76
Transmembrane Helix	141	162	0.87
Non-Cytoplasmic	163	199	0.84
Transmembrane Helix	200	226	0.80
Cytoplasmic	227	237	0.83
Transmembrane Helix	238	261	0.88
Non-Cytoplasmic	262	265	0.76
Transmembrane Helix	266	285	0.78
Cytoplasmic	286	334	0.79
Transmembrane Helix	335	359	0.88
Non-Cytoplasmic	360	367	0.68
Transmembrane Helix	368	390	0.75
Cytoplasmic	391	398	0.58
Transmembrane Helix	399	422	0.87
Non-Cytoplasmic	423	437	0.62
Transmembrane Helix	438	461	0.60
Cytoplasmic	462	536	0.89
Transmembrane Helix	537	554	0.94
Non-Cytoplasmic	555	561	0.80
Transmembrane Helix	562	585	0.89
Cytoplasmic	586	645	0.98
Transmembrane Helix	646	669	0.92
Non-Cytoplasmic	670	689	0.94
Transmembrane Helix	690	713	0.92
Cytoplasmic	714	733	0.89
Transmembrane Helix	734	757	0.89
Non-Cytoplasmic	758	765	0.75
Transmembrane Helix	766	788	0.83
Cytoplasmic	789	807	0.90
Transmembrane Helix	808	828	0.90
Non-Cytoplasmic	829	838	0.76
Transmembrane Helix	839	861	0.94
Cytoplasmic	862	880	0.96
Transmembrane Helix	881	903	0.90
Non-Cytoplasmic	904	921	0.65
Transmembrane Helix	922	936	0.40
Cytoplasmic	937	960	0.59
Transmembrane Helix	961	979	0.57
Non-Cytoplasmic	980	1573	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALNSTVDLL SNSNSSADPF YECMDSYPGN LLIALVIMLN VIFFLPLNCW ILWLIRGIKG  60
   61 VARADFVVLN QSVTEIICNI SLIVFLSGTL PNKKVVTLIA NYLCSTFLMG RPLFQTFFCV 120
  121 ERYLAVVHPL VYLRYTKALK VKASFVGLVW LIILMAGWYT VYSYPTLPIC LFVAIPKPGD 180
  181 GKEKEGAYQL KKKAFLSITV ILITLVFGYG TVSFFILPLN CWILWLARRT TAASSDFVVL 240
  241 NQAVAEVIAN IFIVVFVLGA IFNEKVVILI SVYLCTTLIV GRPLFQTYFC VERYLAVVHP 300
  301 LVYLKYTKAP KFKLPFRPKP GDGEKAGAYQ LKRKAFIAVT AILITLVFGY GTVSCAIVLR 360
  361 DQLPYSTYCL VLNFSWCTLV PSAAVQPYLY LSKIDSYPGY FLIAFYTLVN AVLMLPLNGW 420
  421 VLWLARKSAG VTNADFVILN QSVAEIIGNS CIPTFLIGAM VKKKIFILIS IYLSSTLTVG 480
  481 RPLFQTYFCV ERYLAVVHPL VYLKYTKAPK HKLPFVGLRP KPGDGEKAGA YQLKRKAFRA 540
  541 VTTILITLAF GYGFPEPPIE AYLTSLSLSL SVITACSLGV LKVLLRPSPG EAQKEGMHLL 600
  601 NSSLHLKFSD LHGKLTVSTD NSGKAVHMKV DYVVEKIPSI SQELEVYIVS LLISILVIAA 660
  661 CSLGVLKILL RPSPGEAQKE GMHGQKKRAF IIITSILLLL AVLDLIVFLP IQIKVLWLGM 720
  721 INFRIKGRLE TSEIFTMNLA AVEVFVIMLY FVSMAAYVLQ YQLAELFFLF FYASYLVGRP 780
  781 VMNSWICIER YIAVARPVMY RNPSYVKHRY IISGLVWLVV LIYGGNAVST YPHLYMEVYV 840
  841 VALLISILVI AACSLGMLKI LLKPGPGEAH NEGMHRQKKR AFVIITVILV CISVPYIVDV 900
  901 LLFLQKRYLS TDIFCLVVSI NFWMMRPGNL STSDILAQVI QLRMIRPRPG LTNRKDWNSQ 960
  961 WAGGLVTASQ VLSGGGPTLS FLLDSSSFHK VSPPFRGKKV RRKLLNSVDR CVDEALEGLV1020
 1021 RSHGGLVLLR GHRVVLRSDL QSIKGKVALL SGGGSGHEPA HAGFIGEGML SGAVAGSVFA1080
 1081 SPPPGSVLAA ILTLWKGGAS GVLLIVKNYT GDRLNFGIAV EQARSQGVPV DMVIVADDCA1140
 1141 FAQPSKAGRR GLCGTVFIHK LAGALAEKGC ALGDIVARLN EATKRIGTLG ISLSPCSVPG1200
 1201 CLPTFQLPPG EMELGLGIHG EPGIKRSKVD SADEVVKNII NHMTDSSNKS HLSLKSGDKV1260
 1261 VLCVNNLGAL SCLEIAVVSK AAIHCLEDRG VLVARVMSGS FMTSLEMAGM SLSLMKVDEE1320
 1321 MLRLFDAKTT APAWPNLSTS SVSGRNLFLE PAEKPAAALD KCSEGALYSV IRLVLEAICK1380
 1381 ILLQRQEELN ALDRAAGDGD CGSTHALVAN AIQEWLQTST IPGNLGQLLA DLALLVQERM1440
 1441 GGSSGALYCL FLSAAAPHLR QNCDGAAWAK ALHAGTEAMK RYGGAEPGDR TMLDALCPAV1500
 1501 EELKKLSTAP PGGHITVLQA AVEKADSGAE STRNLTARAG RASYVASEHL TQPDPGAVAV1560
 1561 AAILRAVLDA LKA