YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68362676
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSRLSGPSG CMILAIISIL FIVLSTIALS LNTLPELQET DEFGQTTDNT QLAHVEAVCI  60
   61 AWFTMEYLLR FLSSPNKWKF FKGPLNVIDL LAILPYYVTI FLTESNKSVL QFQNVRRVVQ 120
  121 IFRIMRILRI LKLARHSTGL QSLGFTLRRS YNELGLLILF LAMGIMIFSS LVFFAEKDED 180
  181 DTKFKSIPAS FWWATITMTT VGYGDIYPKT LLGKIVGGLC CIAGVLVIAL PIPIIVNNFS 240
  241 EFYKEQKRQE KAIKRREALE RAKRNGSIVS MNVREAFSRG TDLLDVVVMD KGERSQDNHL 300
  301 SPSRWKWSSK RGTSETSSNR SFNPDQGSPS KARASSPQRL NAQKLEDMYN QMAKTQSQPN 360
  361 LNTKDRNSSR AGHRRDEIEL GALPGQGGDP MNGGREGVVD MKSLSSIDSY ISCATDFQEN 420
  421 PRFHYSPAGG LSLPESSRFS HSPGSGLSSR VSANPSLQTT LEHETMLTPP FSGAKPLNTD 480
  481 GSRQQGLLGN SQKMHSVRVN PRNCAESSPS GGPLSDSSIL SDHSILSPEV SVYTTASTRT 540
  541 PPKTPERKVL TPTVSTFHDA SISKYIDADT DDEEHLRESG PSDRLLGGLS SKPRLGGYQG 600
  601 ATNHLEAAQR LLGQNCLFPL GSSPSVGHEN HVASENSRRP KGDRGHSNAF DKGL

Type	Start	End	Confidence
Cytoplasmic	1	9	0.90
Transmembrane Helix	10	31	0.92
Non-Cytoplasmic	32	51	0.93
Transmembrane Helix	52	72	0.86
Cytoplasmic	73	153	0.78
Transmembrane Helix	154	175	0.93
Non-Cytoplasmic	176	188	0.69
Transmembrane Helix	189	207	0.85
Cytoplasmic	208	214	0.72
Transmembrane Helix	215	236	0.93
Non-Cytoplasmic	237	654	0.90