YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126158911, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTDNVSEVK EKGDRSPWKD IIEDISVLQL VLSFLFLGVA CLLLMIYLMF TSLWIFPTLY  60
   61 FTWQIYDWHT PERGGRRTKF VRGWEVWKHL RDYFPVKLVK TAELNPNKNY IMGCHPHGIM 120
  121 CFGAFSCFST DRNGFAETFP GIRSTLAILA GLFRLPLFRE YILAAGLLPV SKASLDYLLS 180
  181 QTGVGNAVVI IIGGAEESLT SSTGVNTVVI KHRKGFVRLA LEHGADLVPV YSFGENELFP 240
  241 QVVLSEGSVG RRLQVLFKQI MGFAPCIFTG GRWLLLPYKL PVTTVVGCPI NVPLVKIPTQ 300
  301 EQVDHYHGLY MASLADLFHK HKTSYGLAET HELHFI

Type	Start	End	Confidence
Cytoplasmic	1	27	0.86
Transmembrane Helix	28	55	0.81
Non-Cytoplasmic	56	138	0.74
Transmembrane Helix	139	158	0.55
Cytoplasmic	159	176	0.49
Transmembrane Helix	177	195	0.33
Non-Cytoplasmic	196	336	0.54