YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126632148, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLDLTYDY EDYGNVTDYG NFTFGNVTHE ETYYHHTAQN MCFTQVLCVL LLVINMLICL  60
   61 LGLSGNGVVI WIAGFAMKKS VNTTWYLSLA VSDFIFCAFL PFNIAYSATS NWIFGLFMCK 120
  121 FTSFVMFLNM FSSIFILVII SVDRCVAVMF PVWAQNHRTI GKASVLIILA WIASAALSIP 180
  181 SIVYRDVQNY LGTNDCMNNY TSSRYGHKVI AVSRFIFGFI IPFILIILCY TVIIVRLRAS 240
  241 KMAKSNKPFK IMTALILTFF LCWLPYHTFV LIEFNQTFEN GIIRLGMQIG TITAAANSFL 300
  301 NPVLYVFMGN DFRKRFKSSI LSKIENAIGE EGRTISRYLS RSSSVDARAS THI

Type	Start	End	Confidence
Non-Cytoplasmic	1	45	0.91
Transmembrane Helix	46	75	0.81
Cytoplasmic	76	83	0.86
Transmembrane Helix	84	105	0.91
Non-Cytoplasmic	106	122	0.76
Transmembrane Helix	123	142	0.86
Cytoplasmic	143	162	0.73
Transmembrane Helix	163	184	0.91
Non-Cytoplasmic	185	214	0.93
Transmembrane Helix	215	234	0.95
Cytoplasmic	235	248	0.86
Transmembrane Helix	249	270	0.89
Non-Cytoplasmic	271	286	0.88
Transmembrane Helix	287	308	0.90
Cytoplasmic	309	353	0.96