YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VMA21_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNYDKKEVG SVPGAMPDFR GNDGSLVSVL KTLLFFTILM ITLPIGLYFT SKSLLFEATL  60
   61 GYSSNDSYFY AAILAVLAVH VVLALFVYVA WNEGSRQWRE GKQD

Type	Start	End	Confidence
Cytoplasmic	1	28	0.94
Transmembrane Helix	29	50	0.90
Non-Cytoplasmic	51	67	0.92
Transmembrane Helix	68	91	0.92
Cytoplasmic	92	104	0.95