YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68359815, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMTKANLSC LDSLSQGNNC LTARSTSPGV AATLAGVLIF TTVADIVGNL LVILSVYRNK  60
   61 KLRNAGNIFV VSLSVADLVV ALYPYPLALI AIFHNDWTMG SLHCQLSGFI MGLSVIGSVF 120
  121 NITAIAINRY CYICHSLRYD RLYSRRNTCL YLLLTWMLTA LATVPNFLVG SLKYDPRVFS 180
  181 CTFTQTASSS YTVCVVLIHF LVPLGVVSFC YLRIWTLVIR VKGRVRPNPK VRAADLRNFL 240
  241 TMFVVFVLFA VCWAPLNFIG LAVAINPAKV APNIPEWLFV TSYFMAYFNS CLNAVVYGLL 300
  301 NQNFRQEYKL ILRALCTPRA LFTDSSRYNT EAIKSKQSPA GTNNNVKEAN AYKGGVTHTL 360
  361 F

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.94
Transmembrane Helix	31	54	0.86
Cytoplasmic	55	65	0.82
Transmembrane Helix	66	87	0.90
Non-Cytoplasmic	88	107	0.80
Transmembrane Helix	108	128	0.94
Cytoplasmic	129	147	0.88
Transmembrane Helix	148	169	0.92
Non-Cytoplasmic	170	194	0.90
Transmembrane Helix	195	217	0.91
Cytoplasmic	218	237	0.93
Transmembrane Helix	238	259	0.92
Non-Cytoplasmic	260	278	0.84
Transmembrane Helix	279	300	0.88
Cytoplasmic	301	361	0.96