YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68359755
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHIIHPKTL KYADIRRDGW MAVCPLLECV LGCGSGAPQH VARKRKKEQK TPSTHTHTHT  60
   61 RAHTHIVVSQ PVSGCCAQSD GSGGETRVHQ NGRPAPQKHI CSLRFSHGTP EKQLLNSERM 120
  121 FSVIWRILLE LLLVCWMFEG VIRCVFSKEL KSPSVRTKPM SPSDFLDKLM GKTSGYDARI 180
  181 RPNFKGPPVN VTCNIFINSF GSITETTMDY RLNVFLRQQW NDPRLAYKEY PDDSLDLDPS 240
  241 MLDSIWKPDL FFANEKGANF HEVTTDNKLL RIFQNGNVLY SIRLTLILSC PMDLKNFPMD 300
  301 TQTCTMQLES FGYTMNDLIF QWLDEGPVQV ADDLMLPQFV LKEEKDLGYC TKHYNTGKFT 360
  361 CIEVKFHLER QMGYYLIQMY IPSLLTVILS WVSFWINMDA APARVGLGIT TVLTMTTQSS 420
  421 GSRASLPKVS YVKAIDIWMA VCLLFVFAAL LEYAAVNFVS RQYKEFFRLR RKLRQEQRNR 480
  481 AASGQAGAAE TKNKSNNVTG GTPSRNAQRQ CSACAREEQL ASQNQDLYFP GFGIDTSLSG 540
  541 DGPLSEAAAM FAGLPPGHAL FDIRRRFVEQ AKRIDTISRA VFPLSFLVFN VFYWVTYKVL 600
  601 RNEDIHLALR P

Type	Start	End	Confidence
Non-Cytoplasmic	1	122	0.60
Transmembrane Helix	123	146	0.53
Cytoplasmic	147	373	0.76
Transmembrane Helix	374	395	0.91
Non-Cytoplasmic	396	400	0.63
Transmembrane Helix	401	421	0.63
Cytoplasmic	422	433	0.53
Transmembrane Helix	434	456	0.87
Non-Cytoplasmic	457	543	0.62
Transmembrane Helix	544	561	0.38
Cytoplasmic	562	575	0.71
Transmembrane Helix	576	597	0.67
Non-Cytoplasmic	598	611	0.83