YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92096578, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.97
Transmembrane Helix	72	94	0.87
Non-Cytoplasmic	95	99	0.73
Transmembrane Helix	100	120	0.85
Cytoplasmic	121	126	0.68
Transmembrane Helix	127	146	0.74
Non-Cytoplasmic	147	172	0.65
Transmembrane Helix	173	196	0.80
Cytoplasmic	197	203	0.51
Transmembrane Helix	204	238	0.63
Non-Cytoplasmic	239	247	0.73
Transmembrane Helix	248	266	0.86
Cytoplasmic	267	278	0.78
Transmembrane Helix	279	298	0.83
Non-Cytoplasmic	299	329	0.78
Transmembrane Helix	330	352	0.83
Cytoplasmic	353	402	0.66
Transmembrane Helix	403	423	0.95
Non-Cytoplasmic	424	429	0.67
Transmembrane Helix	430	453	0.76
Cytoplasmic	454	460	0.83
Transmembrane Helix	461	485	0.90
Non-Cytoplasmic	486	762	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRASAQKYT VSRALYSEEH LEEEHAKAYR KHKGLLDHIK LYCTCTSERA KNAALSLLPV  60
   61 IGWMKIYSIK EWLLNDIVSG VSTGLVAVLQ GLAFSLLASI STWYGLYAAF FPVIIYFFLG 120
  121 TSRHISVGAF PVLSLMVGAV VTKLVPDEGP PANITAFEGL TKEEQRILVS ASLTFLVGLF 180
  181 QLGMGLLQVG FIVMYLSEPY ISGFTTAAAV HILVSQLKFI LGLTVPGFSG PLSIIYTLES 240
  241 VFTQITSTNI HDLVTSIVVM VAVLAVKEIN DRFKSKLPVP IPIEVIMTII ACGVSYAFNF 300
  301 RDNHGVDVVG KIPNTFESPI APDLQVFQMA AVDAFPIAIV GFAVAFAVAK VYSVKHDYII 360
  361 DGNQELIAFG ASNIFGGSFK ALAASTALSR SAVQESTGGK TQIAGLLSAI IVLVVILGIG 420
  421 FLLEPLPKSV LGAVVIVNLK GMLMQVVTVP YLWKKDRPDC IVWVGTCLAA IILGLDIGLA 480
  481 VGLGLEFLTV VFRAQFPRCC VLANIPGTDI YRDRKHYINI FEPEGVKIFR IPSPIFFANI 540
  541 EFFRDKLKDA VGFNPLRILR KRNKAVKKIK KMLKKGELTL TSNGLQTTCL MPIEESEYDS 600
  601 NADDLDQPTD YTDLPIQINW NAELPANISV PPVNIHSLIL DFSAVSFIDI SAIKGLKAAI 660
  661 KEFIRIDVDV YIVGCDTGIM EKLKNCKFFD DEIKSSIFFL TIHDAVLYIQ ESHPPRTVSE 720
  721 KVSGSHQYQH LNGSSVSNGV ALQEIADMKI EEETDPKPET RF