YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPER1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEQTTNVIQ IYVNGTEQFN ASFDFNITDV KESTDTYEFY IIGLFLSCLY TIFLFPIGFI  60
   61 GNILILVVNL NHRERMTIPD LYFVNLAVAD LILVADSLIE VFNLNEKYYD YAVLCTFMSL 120
  121 FLQVNMYSSI FFLTWMSFDR YVALTSSMSS SPLRTMQHAK LSCSLIWMAS ILATLLPFTI 180
  181 VQTQHTGEVH FCFANVFEIQ WLEVTIGFLI PFSIIGLCYS LIVRTLMRAQ KHKGLWPRRQ 240
  241 KALRMIVVVV LVFFICWLPE NVFISIQLLQ GTADPSKRTD TTLWHDYPLT GHIVNLAAFS 300
  301 NSCLNPIIYS FLGETFRDKL RLFIKRKASW SVVYRFCNHT LDLQIPVRSE SEV

Type	Start	End	Confidence
Non-Cytoplasmic	1	45	0.85
Transmembrane Helix	46	68	0.87
Cytoplasmic	69	80	0.73
Transmembrane Helix	81	99	0.85
Non-Cytoplasmic	100	116	0.75
Transmembrane Helix	117	138	0.82
Cytoplasmic	139	160	0.85
Transmembrane Helix	161	181	0.92
Non-Cytoplasmic	182	203	0.87
Transmembrane Helix	204	223	0.95
Cytoplasmic	224	241	0.93
Transmembrane Helix	242	263	0.89
Non-Cytoplasmic	264	291	0.92
Transmembrane Helix	292	313	0.80
Cytoplasmic	314	353	0.84