YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68357982
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.72
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRIIVIIII ILMSSASGAT QCRSASTALT YKPTHPRAEQ PGKRMSAADD ANPAGAPGGP  60
   61 GGAGAPAPPP NTTSNRRLQQ TQAQVEEVVD IMRVNVDKVL ERDQKLSELD DRADALQAGA 120
  121 SQFESCAAKL KNKYWWKNCK MMIIMGVIGV LFVGIIFLYF FS

Type	Start	End	Confidence
Signal Peptide	1	18	0.75
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	140	0.73
Transmembrane Helix	141	161	0.93
Cytoplasmic	162	162	0.71