YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZDH18_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDCEYQQIS PGAAPPPASP GVHRPGPAAP PGPSPGPAPG APRWSVSGSG SGSGSGSGSL  60
   61 GRRPRRKWEV FPGRNRFYCG GRLMLAGHGG VFALTLLLIL STTILFFIFD CPYLARTLTL 120
  121 AIPIIAAILF FFVMSCLLQT SFTDPGILPR ATICEAAALE KQIDNTGSST YRPPPRTREV 180
  181 MINGQMVKLK YCFTCKMFRP PRTSHCSVCD NCVERFDHHC PWVGNCVGRR NYRFFYAFIL 240
  241 SLSFLTAFIF ACVVTHLTLL SQGSNFLSAL NKTPAGVLEL VICFFSIWSI LGLSGFHTYL 300
  301 VASNLTTNED IKGSWSSKRG GEASVNPYSH KSIITNCCAV LCGPLPPSLI DRRGFVQSDT 360
  361 VLPSPIRSDE PACGAKPDAS MVGGHP

Type	Start	End	Confidence
Cytoplasmic	1	83	0.75
Transmembrane Helix	84	108	0.88
Non-Cytoplasmic	109	117	0.77
Transmembrane Helix	118	138	0.91
Cytoplasmic	139	234	0.97
Transmembrane Helix	235	259	0.90
Non-Cytoplasmic	260	275	0.91
Transmembrane Helix	276	299	0.82
Cytoplasmic	300	386	0.93