YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68357850
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.73
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.72
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	575	0.94
Transmembrane Helix	576	600	0.82
Cytoplasmic	601	905	0.72
Transmembrane Helix	906	928	0.96
Non-Cytoplasmic	929	1080	0.58
Transmembrane Helix	1081	1105	0.85
Cytoplasmic	1106	1118	0.49
Transmembrane Helix	1119	1141	0.88
Non-Cytoplasmic	1142	1147	0.50
Transmembrane Helix	1148	1169	0.93
Cytoplasmic	1170	1255	0.57
Transmembrane Helix	1256	1281	0.82
Non-Cytoplasmic	1282	1292	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQMTLLSITV WFTHFLIVSA FNFNTLPTHT LSDYIETTQI TPTTTTTTNQ QPKTLIKATP  60
   61 SSPLTTITQE NTTNPTKEEH IQPNTAPTQE TTSLYQYSST PPQNDMMDEG VSISSASNGA 120
  121 IGHTNTITRV STNSPRLTSQ NDENSETTNG SYNNELNVTL EMTSPHQYNS SPSQSETDDE 180
  181 DVSISNASGV PMNYTNTTPT VFTNFTRLKS HIYKENQTRI MLNRSYNDNG DTTEPNTTLN 240
  241 LTSMHQYNSS LSQNHMMDEG SNDVVVNYTN PTKAVYTNSP RLTSQKDENN ETWTTSNVSY 300
  301 NNDRYTAEPN TTQNMTSMLE MRSLHQHNNS LSQNDTNNED ASISNTSDIA VNYTNTTPTV 360
  361 FTNFTRLTPQ KDENNQTGIS YNHFQTVDPF SNVSTHPWKD KEDETTKADE GDYETNSTQA 420
  421 TFVNTSEQWR ETRGTEGSYD FTSEHREEDY NTTANTINAR AATDWLTSQN ILTATPAYTV 480
  481 TPDSVVTDEP EYHTSAGGVD HSTKPQDLLT STHTESANMT GTGPPIGSTT VNNNNSNITD 540
  541 VLTDNSTYPT TNITDTESNV WPTCLNSSRQ STIVCFITVW ALAMTAAIFL GVTIFLWVRL 600
  601 SIVKERMKMK EKRVEVGEKQ SLWADPKASV QERVEFWYVN GSTLEADRKD KNRKRSTSAQ 660
  661 EFAVTNDNIT TALPDNITVE DTTVLSSFYH VTDEAISSAP VDLVTDVQTE PDTYDLQTTL 720
  721 ASTTGTMQET TTMNTTPLGP VIQQTTPESA PETTATAEIQ LTTMTSITLP VYMETLMTEQ 780
  781 KSPEATTTSQ FETTVSFNVP MLTSPSERPT DFITTRALAM TTSDSTEDPS TNMIELPTHE 840
  841 VSSKLLNPVD NSTTTPTETP TSASQLTENE PIINGVLHDN TVSEDFMPVT SVVNVKQSTS 900
  901 HEETNWLLII IVCAIAACVL CVIVILFIQQ RKKKASRTFG PAYMNGQSKR SKKKKGAEDD 960
  961 RWAGPVNLEA GAEYDADVQE GLLHNDEKKD GDDVVLSTFA TMDEDAMSDG GVGGEGTKEA1020
 1021 KKWEEQEPMP FIDEDVDENK VGKTLSENGS SKGDGKSEEN MNGGETMSVS RGCLCCVKYL1080
 1081 MFVFNLIFWL GGCGLFGVGV WLAFTQSEFS SLPLSFPSLS AANLLLVAGG VTMVTGFLGC1140
 1141 LGSLEEHFFV ILLILVLTEV VLILVLSLYH EELDKKAKDD LREGMKGYSK NDGLRKSWDN1200
 1201 MQMIFKCCGV SNHTDWHNKT SDGKLPGSCC SNDPSSCRHW EEPCYEKAKQ WLLTNITSVL1260
 1261 GFGVCIGIVQ LLALVFSMLM YCQILRAEKY MD