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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|68355932
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKCKISYL SIMAYADKRP TFVETKKRQD QKTVVAELPV ETDAETVRCF LGTSFGTEDR  60
   61 EEAEKTHQPR FSHEGGVHLG DDVTRQVSLE STNETRQLGS FGAHRNEWVS VLYKAKEQPQ 120
  121 QDADIEGMRH RHAGAVHQQH SNDADARDSP KEASCPVAPL FSLPPPPPSI KERSTSSHNN 180
  181 RHVQSCPDRG TRNDECLPLT GHCSLAQGAR TDRQPYDNLP HPFPGASSGY QCHSEGSHSP 240
  241 QQRSSVSPQP SPSELLPPPL PSHISNTRDT RQKSANYKQD IVQRRVGEGG RRDQYQLLQQ 300
  301 PCYNQQRDPS FKPLLPNSSQ GHVNEREEAE KERQLIEPQA QLLLGSSLPI NYCIGGSGLQ 360
  361 QQHSDRDSRY QEGKIALCQP YRCERALERN SSVSSSEASS PPYGSSSQLW PEPHDKEEKK 420
  421 NRAGKHKAHA ERTKLSHAGS KASVSESSHS LPQIAMNSCK YNGGVVRPLG SLAASRRNLA 480
  481 EHDSETQPLQ TLHSSGLEVV VSKGGGEDPS KASNESLVRE SGNAPQKKNK DIGYKLGHRR 540
  541 ALFEKRKRLS DYALIFGMFG IVVMVTETEL SWGVYTKESS YSFALKCLIS LSTVILLGLI 600
  601 IMYHAREIQL FMVDNGADDW RIAMTYERIF FIVLELLVCA IHPIPGQYVF TWTARLAFTY 660
  661 VPSVADADVD IILSIPMFLR LYLIGRVMLL HSKLFTDASS RSIGALNKIN FNTRFVMKTL 720
  721 MTICPGTVLL VFSISSWIIA AWTVRVCERY HDKQEVTSNF LGAMWLISIT FLSIGYGDMV 780
  781 PHTYCGKGVC LLTGIMGAGC TALVVAVVAR KLELTKAEKH VHNFMMDTQL CKRVKNTAAN 840
  841 VLRETWLIYK HTKLVKKIDH AKVRKHQRKF LQAIHQLRSV KMEQRKLNDQ ANTLVDLAKT 900
  901 QNVMYDLVSE LQERSEELDK RIGTLEDKLD AVTGSLQALP CLISQAITQQ QQDLLDGFVH 960
  961 RFRPPSLGSD RSWTPSRRRR SPSTAPHTSS DSG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle