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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|68355322
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKPSTQSFC KAARIVCIRG KMAVSTQLGL LLWKNFTYRR RQTIQLLVEI IWPLFIFFIL  60
   61 ISVRLYYPPY EQHECHFPNK AMPSAGTLPW VQGIICNANN PCFRYPTPGE TPGVVGNFND 120
  121 SIISRLFTDA KKILLYSQQD KSFEGFKGLV RALRKLQRNT EGFKLKDFLH DNETLSAFLE 180
  181 KNATLPKHAV RQIVEANVNL EKVLIKGFGV HLTDLCNSTS LEEFVTIADK DVSQLTQNII 240
  241 CQSPADWLNN AEQHFLSNLD FLKPIRKDVK SDPKIIKDVS IATDSLLESL GALAVELASM 300
  301 KSWRDMRNEI LYLTGNSTQS PNHMYQAVSR IVCGHPEGGG LKIKSLNWFE DNNYKALFGN 360
  361 NGNDSDSEPA SVYDNSSTPY CNNLMKGLES SPISRMIWRA LKPLLMGKIL YTPDTPATQR 420
  421 IIHEVNKTFQ ELGVLRDLGG MWEEMRPKIW NFMENSEEMD LVRTLLQNNA SARFFNAKLS 480
  481 GTEWRVEDVS RFLSKSSEDT RPHGTAYTWR EVFNETDQAI QTISRFMECV NLDKLEPVAN 540
  541 EERLVNKSMR LLDDRKFWAG IVFPDMQSNT SDLPLNVNYK IRMDIDNVER TNKIKDGYWD 600
  601 PGPRADPFED LRYIWGGFTY LQDVIEHGII RALTGSKEKT GVYIQQMPYP CYVDDIFLRV 660
  661 MSRSMPLFMT LAWMYSVAII IKGVVYEKEA RLKETMRIMG LDNGILWLSW FISSLIPLLI 720
  721 SAALLVLILK MGNLLPYSDP GVIYLFLSSF AVVTIMQCFL ISTLFSRANL AAACGGIIYF 780
  781 TLYLPYVLCV AWQNYVGFGA KIVVSLLSPV AFGFGCEYFA LFEEQGVGIQ WSNLLSSPMQ 840
  841 EDSYNLTTSI CLMLFDSVLY AVMTWYIEAV FPGQYGIPRP WYFPFTKSYW CGEKCGWTTS 900
  901 VPSNRKENAE AVCIEEEPAH IDPGVYIENL MKIYSNGKVA VDGLTLGFYE GQITSFLGHN 960
  961 GAGKTTTMSI LTGLFPPTSG TAYIQGKDIR TDLNAIRQNL GVCPQHNVLF SMLTVEEHIW1020
 1021 FYARLKGLSA EKVKSEMEQI VMDLGLPHKR TSRSNQLSGG MQRKLSVALA FVGGSKVVIL1080
 1081 DEPTAGVDPY ARRGIWDLLL KYRQGRTIIL STHHMDEADI LGDRIAIISH GKLCCVGSSL1140
 1141 FLKTQLGTGY YLTLVKKDFD LSASSCRTSS STVSYSKGSL KKDDSVSESS SDAGLGSDHE1200
 1201 SETTTIDISL ISNVIFKHVP TARLVEDLGH EITYVLPYES AKDGAFVELF HEIDDRLTDL1260
 1261 SISSYGISDT TLEEIFLKVA EDCGVDAETS DGTLPARRNR RHAFGDHQSC LKPFTEDDFD1320
 1321 FNDSEGDPES RETDWLDGAD GKGSYQVKGW SLKRQQFVAL LWKRLLYARR SRKGFFAQIV1380
 1381 LPAVFVCIAL VFSLIVPPFG KYPSLALEPS MYEEQFTFIS NDAPEDRHTN RLLDALKDSP1440
 1441 AYTDQCTDGK NTASRSCPIK DGEWLVPEVT ESIEAIFLNG NWSMENPSPL CECSCEGRKK1500
 1501 MLPECPPGAG GLPPPQIKVT HDETLQNLSG RNISDYLVKT YAQIIGKSLK NKLWVNEFRY1560
 1561 GGFSLGARNT QALPPGDELT DAISHIRSRF SLESGTAADR FLGSLSTFIR GLDTNNNVKI1620
 1621 WFNNKGWHSI GSFLNVMNNA VLRANLPPGL DRSKFGINAF NHPLNLTKEQ LSHVALMTTS1680
 1681 VDVLVSICVI FAMSFVPASF VVFLIQERVN KAKHMQFISG VQPFLYWLAN FVWDMCNYIV1740
 1741 PATLVIIIFV CFQQEAYVSS TNLPVLALLL LLYGWSITPL MYPASFFFKI PSTAYVVLTS1800
 1801 VNILIGINGS VSTFVLELFG SNEIGGINDI LKNVFLIFPH FCLGRGLIDM VKNQAMADAL1860
 1861 ERFGENRFRS PLAWDMVGKN LFAMAIEGVI FFSITVLIQY RFCIKARSLS TKLKPIGEED1920
 1921 EDVARERQRI LGGGGQTDIL ELRQLTKVYK RKQKPAVDRL CVGIPPGECF GLLGVNGAGK1980
 1981 TSTFKMLTGD SVVTSGEAYL AGNSVLTEID EVHQNMGYCP QFDAINDLLT GREHLEFYAI2040
 2041 LRGVPEKEVC KVADWGIRKL GLMKYVDKAA GSYSGGNMRK LSTAMALIGG PPVVFLDEPT2100
 2101 TGMDPKARRA LWNCILSIIK EGRSVVLTSH SMEECEALCT RMAIMVNGRF RCLGSVQHLK2160
 2161 NKFGDGYTII LRVAGADPRL EPVMEFIERE LPGSTLKEKH RNMLQYQLSS SLTSLARIFN2220
 2221 ILSKNKEQLH IEDYSVSQTT LDQVFVNFAK DQSDEDHLKD ISMNKNDAVV DISKLNAFLT2280
 2281 DEKAKETVV

YRC Informatics Platform - Version 3.0
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