YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68354930
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNKSASGI CQVTCCVVIY LEKMSAHDHF SLCLCDLIRL LWSLMLPCFY LSFLLTTILF  60
   61 LFIMGVRSWL QMKRKTRRVQ DGRPAVAFFH PYCNAGGGGE RVLWCALRAL QNRYQDVSFV 120
  121 VYTGDQGVTA EEILDGARRR FNIRLPRPVK FVFLKHRLLV EAKLYPHFTL LGQSVGSIFL 180
  181 GWEALTEFVP DLYIDSMGFA FTLPVFRYLG GCQVGSYVHY PTISTDMLSV VRERNPRFNN 240
  241 ADYISSNPVL SAIKVIYYCV FALLYGLAGS CSDVIMVNST WTLGHILALW RTPNRTSVVY 300
  301 PPCDVQAFLD VPIGEDNEEK EQKKCHSLVS VGQFRPEKDH QLQIRAFKKL LNRKEAELAG 360
  361 REAVKLVLIG GCRNQEDEDR VLMLRGLCQE LGIADRVEFK LNIPFQELKK DLADATIGLH 420
  421 TMWNEHFGIG IVECMAAGTI ILAHKSGGPK LDIVVPYDGG PTGFLADDED NYADAMERIL 480
  481 SMSPATRLEM RRRARLSVSR FSDQEFEGSF LSAMEPLMST LRA

Type	Start	End	Confidence
Non-Cytoplasmic	1	47	0.70
Transmembrane Helix	48	70	0.89
Cytoplasmic	71	163	0.90
Transmembrane Helix	164	185	0.60
Non-Cytoplasmic	186	202	0.57
Transmembrane Helix	203	217	0.37
Cytoplasmic	218	254	0.58
Transmembrane Helix	255	277	0.61
Non-Cytoplasmic	278	523	0.68