YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169153846, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.92
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	295	0.99
Transmembrane Helix	296	318	0.91
Cytoplasmic	319	359	0.95
Transmembrane Helix	360	383	0.91
Non-Cytoplasmic	384	391	0.78
Transmembrane Helix	392	414	0.91
Cytoplasmic	415	428	0.86
Transmembrane Helix	429	451	0.89
Non-Cytoplasmic	452	464	0.80
Transmembrane Helix	465	488	0.89
Cytoplasmic	489	515	0.95
Transmembrane Helix	516	537	0.90
Non-Cytoplasmic	538	550	0.76
Transmembrane Helix	551	574	0.91
Cytoplasmic	575	584	0.82
Transmembrane Helix	585	607	0.89
Non-Cytoplasmic	608	624	0.87
Transmembrane Helix	625	648	0.91
Cytoplasmic	649	658	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEFHRVRVV FVSLFVCGLL RDALSFYLPG LAPVSFCKKE AGDKNSEVPD CKSTIELFVN  60
   61 RLDSVESVLP YEYTAFDFCA EQHEKRPSEN LGQVLFGERI ELSPYKFLFQ NDLQCQSVCV 120
  121 KSYKTQDAGD KAKLDFLKKG MLLNYQHHWI VDNMPVTWCY DVEDNQKFCN PGFPIGCYVT 180
  181 DTGRAKDACV VNADFNDKDT FYIFNHVDIT IFYHNVENEV AGARLVAAKL EPKSFKQSNV 240
  241 DKPDCTGPPM SLSNKFNGEI RIPYTYSVKF LEDKTIRWAS RWDYILESMP HTNIQWFSIM 300
  301 NSLVIVLFLS GMVAMIMLRT LHKDIARYNQ MDSVEDAQEE FGWKLVHGDV FRPPRKGMLL 360
  361 SVFLGSGTQI FIMTFVTLFF ACLGFLSPAN RGALMTCAVV LWVLLGTPAG YVAARYYKSF 420
  421 GGEKWKTNVL LTAFLCPGVV FADFFVMNLI LWGEGSSAAM PFGTLVAILA LWFCISVPLT 480
  481 FIGAYFGFKK SAIEHPVRTN QIPRQIPEQS FYTKPLPGIV MGGILPFGCI FIQLFFILNS 540
  541 IWSHQMYYMF GFLFLVFIIL VITCSEATIL LCYFHLCAED YHWQWRSFLT SGFTAVYFLV 600
  601 YAIHYFFSKL QISGLASTIL YFGYTMIMAL IFFLFTGTIG FFACFWFVTK IYSVVKVD