YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68354836
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	45	0.95
N-region	1	36
H-region	37	42
C-region	43	45
Cleavage Site	45	46
Non-Cytoplasmic	46	494	0.98
Transmembrane Helix	495	519	0.80
Cytoplasmic	520	536	0.78
Transmembrane Helix	537	558	0.92
Non-Cytoplasmic	559	578	0.76
Transmembrane Helix	579	598	0.67
Cytoplasmic	599	605	0.65
Transmembrane Helix	606	629	0.79
Non-Cytoplasmic	630	639	0.65
Transmembrane Helix	640	658	0.82
Cytoplasmic	659	681	0.88
Transmembrane Helix	682	704	0.87
Non-Cytoplasmic	705	718	0.77
Transmembrane Helix	719	740	0.86
Cytoplasmic	741	754	0.82
Transmembrane Helix	755	774	0.92
Non-Cytoplasmic	775	796	0.82
Transmembrane Helix	797	816	0.90
Cytoplasmic	817	825	0.75
Transmembrane Helix	826	848	0.88
Non-Cytoplasmic	849	854	0.74
Transmembrane Helix	855	875	0.94
Cytoplasmic	876	961	0.97
Transmembrane Helix	962	983	0.91
Non-Cytoplasmic	984	987	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLRPRASSQ PGRANTLPSF KPFPILRPRA SAATVSVAFA FTSSGTRNHL RGNVRCAESK  60
   61 CMPSEPTVSL ALKNVCDAVL QEQKVSVGVP SIGSSNGTSK PEALCATHGE GLKLFCQSDE 120
  121 EVLCCVCQTS KKHQGHSVCP LEEAANDLKE EMRQIVIPLK KSLRRLYEAK QECDDITVHI 180
  181 KNQRQQTEKQ IHEEFEELRQ FLLKEESARI ALLAEEEETK KQAIKKTTDS ITYDISTFSQ 240
  241 AVVAIENEIA NDDSLFLQNY KNVKTRAQIT FHEPEKVPNS LISVAEHITS LKFRVWEKMQ 300
  301 NLVECTYPCL SLSKDLTSVS NTGTMQKLPD NPERFDHLVF VLGSKGFSSG CHSWEVEVGK 360
  361 NNDWVIGVVK ASVARKGKIS GCPEGGFWTI ALSDGQYTAM TTPRTQLKLN SHLERVRVKI 420
  421 DYDAGEVSFF DSVDVAPLYT FTDHFTEMMF PFFCPGANIN RNNPGPLKIC PVRVAVWNSG 480
  481 SCTVFCGHLG KTELAGVALA IAVINVTGIS IGSGLASACD TLISQTFGSN NLKRVGVILQ 540
  541 RGILILLLAC FPCWALLINT EPILLAVRQS PNVASLSQLD VKIFMPALPA TFMYQLQGLY 600
  601 LQNQGIIWPQ VITGAAGNIL NALINYVFLY LLDLGVPGSA AANAISQYSL AVILYTYIRC 660
  661 MGLHKATWDG ETFACVRSAG SYLTWKVNIS VLCQFVFTFI AGLISEVELG AQSIVYELAS 720
  721 VMYMFPLGFA VAAGVRVGNA LGAGNTEQAK LSAKVSLVCG LLVSSVIAVV IAGTNNIIGY 780
  781 IFSKDEDIVL RVSQVMVMYG FVHLFDATSA ITGGIVRGAG KQQIGALCNM VGYYCVGFPI 840
  841 GVSLMFAFNM GIVGLWIGFF TCVFLQSLFF IILIYRLDWK KATQEALIRA GVQLTEIKYE 900
  901 SFGLENKGCT EEAAQENTEE GQTDTNTDLE GLSKGEGGIT DAVALVTVGE VLTAKQLAVR 960
  961 RGLAFFFMLL ILTGGIVLNE VLIRFVI