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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cp309-PB
Protein type: Globular with Signal Peptide
Type Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAINIALFTL QITSLLRPHG ASVSYKAIEA ATLEELPATS VATATSTAAT SRATGGAAAT  60
   61 CVDVEFIPTL NIIFEKPTSS SEQLQCAEKS EHVAGGVSDK EPADDCDSDN DSTRTYIISR 120
  121 SSWTGVTSSS STPYAVTSTD TAELLRRQNN LSLTEEDQSV SSFSIEQPTS SITIEMADQR 180
  181 TTTTTTTTAT TATTPSSANI LATTATTTTT TSSSIEEEIE EAIEISEVEE QLNTPLESLS 240
  241 EAAAYARPKD EQSSAKSLSS NPAEDEDADE FRIDDAQLSG GQLAQHFLVD EDESEEGSDL 300
  301 PAASKVEVSL SSNDDDFDIS LPLEQRKPVH SLHEDDESVD QSLSNQSTTD DVSELVEEPV 360
  361 HEMDDKTDGS AAISASAPQE TQVDESQITD EQDHSMEEIV ATNESIEVTY EAEETVNTSQ 420
  421 KQDLITDLDE ESEDQVHVDN RPTSTLQALK LPALQQPQIV ERKAATALTT LRLQADVLEP 480
  481 LELTILEMDD DENEEDDDDE ESSLQLMKLR LMAMNQQMIV DNAPKLSPTE AEQTQVTSSS 540
  541 NNLEIKQMER VPLTEFSKDV LEDITEESER LLSMSTTMEE EQDPPSLSLD ESKTLLQPGA 600
  601 HKTGGSSSSL VSLNMLKQLE AKVQELHTQL ETKDNCLASL NLQLETARRE SSAGPASARD 660
  661 SSSLMTNSTE YRTLQEELGG PTLDIYVEMS RRDELIAKLT DSLQQSLNVR DKLQVDADRL 720
  721 GGEVQNLRRQ LQETLDAVKR SSAVWPDQEC NPGQRISEIS MDLISESDDD LDRHFLTDNE 780
  781 ERGSRSSKER QLTQLQTNEE LGLQASNPEW TPTFSKQIEQ FHTYLLPTEQ RIFQMVQRKF 840
  841 DDYLNQQITL CRDLGAQELK IARDQWESEK LTSEQNQQAA HAKQMEDLRK YFEHKCADLE 900
  901 KQFSDDVFSH KSQHQTGDSS SECSEVDQLP EEGAAAVSSK EPSPRKRKRA ELLLSPSHRQ 960
  961 MTPCGLDSLG ENTGKTEKDN TADIADLKIF YQTHIKELKR AHEDQVRKLS DRIKFYERQQ1020
 1021 GDDDYKPATE SPERTCPDQE SAGGVANTSL IIIDEDELNF NNESQVIQRI IEEYEKRLQE1080
 1081 QLALARQDIA TELEQQIKSL LSENTVDDQH WPKELILLRE KFTAKSQLEI TQLNIKHAEE1140
 1141 MSRLKLEFEK QLNRKNKRHL TFDAARDLEQ VICERDGLRE LSKSFRSVLC RLAKCVAHCE1200
 1201 EDLNATLSEE VQRLLFHSRS QDGGDDLEAT ISSSLNNTKH MLRVPDVHSL LEVVEDPSLV1260
 1261 QFIDSKSNEE PSEDFDLNDC LERLKSEASY LLHLSEDLHK QRTHDESSEH LDEPEKQEHE1320
 1321 LCCEAEDGLK TTGAVNQQVL SKFLRTNSLN DQQMGVANQR KNSNPEAGKT HSSLPPDLQE1380
 1381 HAGNASELSF QLVQLKNRLI KSEADRQNLQ QQLSRTIDRN AELGQELQAL RDQLSQLNSL1440
 1441 NHTDYNEGYG LGTMKSLQEQ GLDQSSASFL ALQERARHLL SSSPVKEQPS RDHGNSTVIL1500
 1501 LQMIEDFCRE GDKVVEFSKK DREDLQSQID TADKQLKDTR RFLEDQAAER EQERDEFQRE1560
 1561 IERLKAQLRD KEKEHSSYAN ASEEYAQLES QFREVNQQLC ESNAKRDKFE VELKASIDKI1620
 1621 FVLREIISEL ETQVQTKALN EEVLAEKAQQ LEEYVSLQMR DNDILQQEVH SLKTDIGEGY1680
 1681 QSRIRVLEEK LKQSGPTAEQ GVVLSQVAEK LRDIETTLDQ KTKALESLHN SNATSNSASL1740
 1741 SVTEDVSIHG SKEPTAVGSP SHPSLTVEGV QRVTEKLDRH TRVEEAAIKR IRDLEMQVHQ1800
 1801 MRAGCVELQH ERDTLQGRME EQTQRISTLQ NRLEEQRQRA EQLHRTGTSD LNTRVHELQG1860
 1861 EVQNLYEQLA ARDKQMANMR QQLQRSKEEI TRLETEVEVR TQPDRSLVNK LQAEVQQKGA1920
 1921 EIVKLKDKIR TEMINRLAIP DLMETMLADK NDEIDHLRDQ LEAKEKELQA SQQEASQISS1980
 1981 PSGAAGKQEG SGGKLSARTL SDIGSITEFP EPDVERRAAM RSLTALQMSE GAGGFLHQTM2040
 2041 ETSKEAVANL THKRTDDLSG FIVPYPVNTF EHPHYFQALG VTAQSTDGLT PGLVPRQINF2100
 2101 SNLTEDSKLK TTSLLMHTPE LPRPTTPPEI HQLRVKLSDL QTEKQRQQSE LEKKLQDLQK2160
 2161 ELEQEKEKLS RQAQTLQSYE ESEAKYRLRI ENLESKVLET AAQAASDREN LRKELNCVSA2220
 2221 AHEQCENAAA ARKRELEKLN SEVKVKADQL HAALRRCADL ELQVLTLERD LERLKNSDNS2280
 2281 SKQYSVDEIA QQVEKELNYS AQLDSNILKA IESEEENNLD KKLQKGVQTE EETLPGTGNG2340
 2341 TDDENFTGER ELLNQLEALR AQLAVEREQC EAMSKELLGE KQHSQDIQEQ DVIIIEAMRK2400
 2401 RLETALDAED ELHKQLDQER ERCERLQTQL TSLQRAESRR NSSLLLKSPG DSPRKSPRAD2460
 2461 FESELGDRLR SEIKLLVAQN ERERERSADA QRSSERERQR YEKELQERVA YCERLKQEME2520
 2521 KLSRDKESAE TELEHFNERL TLQASEIESL EARLVTLQEA ETRRANTRTR QHQENVKLQA2580
 2581 EIHELKSKLL AAEAARDCLD QKVTQLRFDV SRSGQREAKL AEALAQANDR LAHSTDDNVP2640
 2641 AQFMQKMKEI NALLAENTQE NRQMAETVQF LVGERIALQK KCEELGGAGN TNVTELEERC2700
 2701 RQLIGRYLRV ESHRKALVYQ KRYLKLTLEG YQASEQLALQ NLRGGAEQPP QRNIKKKFKT2760
 2761 VALAIIAIQR IKYIGRIWHT GKRIVSKSVF TITQQRSPGL NLNVAPPQSP LPGPNSNLPT2820
 2821 NNNNLMGRLS YAPLSPPMVN FSTVQPIMLP SDFTLQAPTT SLQTTIANNN SENTLPSLAR2880
 2881 LDWPTMQKPK RAHARHH

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