YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|227956386, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIFNKLFHT NKASPKNTLS STMSFLFGST TAGQNVTERT AMQNTAVYAC VRVLAESLAT  60
   61 LPLHLYQLTD DGGKQRVNDH SLSFLLHDAP NPEMTSFIFR ETMMTHLLLW GNAYAQIIRN 120
  121 GQGQITGLYP LMPDRMDVNR ARNGELYYTY TRNYDDYQAK DESKQVVLLS DEVLHIAGLG 180
  181 FDGLIGYSPI AMAKNAIGLS LAAEQYGSTF FKNDATPGGI LEHPSVVKDP ERLRKSWQSQ 240
  241 FSGPSGHSIA VLEEGMTFHQ LSIPPDQAQF LDTRKFQLDE IARIFRIPPH MIGDLERSTF 300
  301 SNIEQQSLEF VKYTLNPWCV RWEQAMNQQL LSKEEQGRYF IKFNVDGLMR GDYESRMNGY 360
  361 AIGRQNGWLS ANDIRELEDL NRIPTEDGGD EYLVNGNMLP VKDAGQFYQT KTTGSDQA

Type	Start	End	Confidence
Signal Peptide	1	33	0.95
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	418	0.99