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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|68137455
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.40
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLGLVQLLV GFVVAWEAVE LVLRHGLLLS VFKLAILAAL AAAAGCVAII FFARAVAWVL  60
   61 QRAAKLSIGC RSYGFNYLRD ITISSPKGAV ESICIGEIRL GLRKPITQLG FTVLTHGPIL 120
  121 QLQISDLDVV LRQPVKSTNK KKPAPRKPIS TTTAKAKGKS KGQVKWRLIT SMASLLSLSI 180
  181 VELRLKAPKA ALGIKDLKTD ISKTGGLDPV LNVQVNIIPL FVQALDSDSI GNNTLVFSKL 240
  241 DWWVSGPYCS AMDTSDHSSF LFEDISLSCD LHQRDKAIRV KNLDLMLGPI VVNLEEKLLA 300
  301 KKKPSASTVA EQKDEPSVDN KSAARSEGGK LASLNKKISM FPEKVSFNMS KLVLKFLPKD 360
  361 HGLSINNEIG SISLRCTRLQ PQDFGEVTTH IRLETDVTEI HLLMDGATSV LEVVKVSTVV 420
  421 SANIPSQPAL PVQAEVDIKI SGFQCNLIVS RIKPLIRINS DKKKPLVLHE NPQQKKAPKE 480
  481 KLALSLACTM SVPELTLVLH SLDDVPLYHC IFQSANVSAS KMIDRGTQLH GKLGDLKFLV 540
  541 PSKHQQSMKE GASGTLLHIS HSTLDLEQND PGQDNDEDHA KSAISVNISG IRMHFCFSYL 600
  601 ESLCATAMSY KVFMKSILPP KKRSVQENAS QKSTKKAKRA LLLKINVAQC SIVYDGEMRL 660
  661 EDMSIADPKR VNFGSQGGRV VIINEANGSP RMAYVNSTSL PDHKNVHFST SLEIYQFGVS 720
  721 LNKAKHTMQV ELENFRLTHK EDQLDNKPVE ETKLFDVRKA KFVQRSGGLN DIAACSLINV 780
  781 TDIAVRWEPD PYLELLEVAT RLKSVLHRMK LQNSVTEVKD ENIEHGYSFQ KGITLRPWSA 840
  841 RKRHKRSRES VIAIDLESLK ISGELADGVE AMITVGYIFS ENAKIGVLVE GISVSFCGAW 900
  901 ILKSSRMQLS RIPISVSDSN SDKKLQSAAA CDWVIQCRDV NICLPFRLQL RAIDDAVEDT 960
  961 LRAFKLISAA KTSVLFPEKK SSTTSSKKSK PKSTAFRYVR IIVRDLIAEI EEEPMQGWLD1020
 1021 EHMILMKNVF CESTVRLNLL DELSPGKNKD SPKAKLDSSE KNSGCPDVDA YVPGTHSIEK1080
 1081 LREEIYRQAF QSYYQACQKL PVSEGSGACS SGFQSGFKMS TRRASVMSVC AKDVDVSLSK1140
 1141 IDGGDEGMIS FIKSLDPVCD KDDIPFSRLY GSNFSLKTRS LSAYLRDYTF PLFSGTNGKC1200
 1201 DGRLVLGQQA TCFQPQARQD VYVGKWWRVN LLRSATGYTP PMKTYADIPL YFKKAEVSFG1260
 1261 VGYEPVFADV SYAFTCALRR ANLAKRWYFE RPEPPRRERS LPWWDDMRNY IHGKFKLCFN1320
 1321 ETKWHLPAST SPYEKLDELL IITDFMEIHY VDGYVSLSSK YLRVYLTSLE SLAKKSSLEI1380
 1381 PHHPAIPFLE TPSFFMDISI EWGCDSGNPM DHFIFALPAE GKPRDKVFDA FRSTSLSLKW1440
 1441 SFSLKPYTTE PIEHQKKSNL NTTAPTVNVG VHDLAWLMKW WNLVFLPPHK LRLFSRFPRF1500
 1501 GVPRFVRSGN LPLDRVMTEQ CIRFDAMQLQ INNMPLQADD PAKGLTLHFT KFRYEIAFSR1560
 1561 GKQIFTFDCK REPLDLVYQG IDLHLLKVFI NRIPESSTSM DSKIENKVLQ TKDKDSLGCE1620
 1621 KGKKKTSPTE KSRDDGFFLY SDYFTIRKQT PKADAARLSA WQEDGRKKTE MPLIKSEFDG1680
 1681 GDESDHDQSG SDDEGFNVVV ADSCQRVFVY GLKILWNLEN RAAVLSWVGG LTQAFQPPKP1740
 1741 SPSRQYTQTK ILEKKQLIKE AEMSKDGALS SVSSTSQPSE PQQIKSSESP PSNGSGKPDL1800
 1801 TSSSENALKR SNNSDSEEEG TRHFMVNVVQ PQFNLHSEEA NGRFLLAAGS GRVMVRSFHS1860
 1861 IVQVGQEMFE KAIGSSNDAT GGTGPEMTWS RVELSVMLEH VQAHVAPTDV DPGAGIQWLP1920
 1921 KIHRRSSEVK RTGALLERVF MPCQMYFRYT RHKGGTPELK VKPLKELTFN SPDITAGMTS1980
 1981 RQFQVMMDVL TNLLFARTPK KPKSNLSYPL DNDDDNIEEA SDAVVPDGVE EVVLAKIGVE2040
 2041 VKERARKLLL DDIRALSICG ETSHGQSQSP KANDIAWIVT GSRLMLVKQL KKRLVNVRNG2100
 2101 RKEAYSMLRT AMQKAAQLRL MEKEKNKSPS FAMRISVRIK KIVWSMLADG KSFSEAEIND2160
 2161 MIFEFDRDYK DIGIAQLTTK LFVLKNGLAN AKSDTVVSPW NPPAEWGKNA MLRVNAWQGA2220
 2221 PTGGNPVIES FLVDIYPLKI YLTEAMYRMM WGYFFPGDEQ QPQKRQELFK VSTTAGTRRK2280
 2281 KNTSVAETNS PNNQSSKETT FAQKPELRRT SSFDRTWEET VAESVANELV SQMEGQTNTQ2340
 2341 YEPQDAAKDS KLLRPVRSTR EDKKIVEPNE LKQSRPQKMM DFRNIKISQV ELQLTYEGLP2400
 2401 FAVSDVRLLM DTFHREDFTG TWARLFSRVK KHIVWGVLKS VTGMQGKKFK AKSSSQKEPS2460
 2461 TALISAADFN LSDSDGDEAG SSDQLPAFLK KPSDGAGDGF ATSVKGLFST QKKKAMAFVL2520
 2521 KTMKGDADHD FHGERSENEI EFSPFARQLT ITKTKKLIRR HTKKLNKSKV HKVTATELEV2580
 2581 AELPPRAPGY NTDSSSDSSS AETSPKD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle