YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NTCP5_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	134	0.99
Transmembrane Helix	135	156	0.90
Cytoplasmic	157	172	0.92
Transmembrane Helix	173	196	0.89
Non-Cytoplasmic	197	203	0.78
Transmembrane Helix	204	224	0.95
Cytoplasmic	225	231	0.78
Transmembrane Helix	232	253	0.86
Non-Cytoplasmic	254	266	0.74
Transmembrane Helix	267	289	0.88
Cytoplasmic	290	302	0.88
Transmembrane Helix	303	325	0.84
Non-Cytoplasmic	326	333	0.74
Transmembrane Helix	334	353	0.93
Cytoplasmic	354	364	0.71
Transmembrane Helix	365	386	0.89
Non-Cytoplasmic	387	393	0.88
Transmembrane Helix	394	416	0.91
Cytoplasmic	417	434	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGKLFIILL LLVTPGEARK SFLRFLNIQN PEMLSFTKPE ETVIVRSSYE GKRPHSSYLL  60
   61 VKLEDPTVLQ VVNVTKTSLD FTDFTINLKT FPGETNLTMQ LWESEGRQTR LIEEITNIRV 120
  121 SVFRQTEDSL FQEPIHVNSS VFLLVLLMIL LNKCAFGCKI ELQVLQTVWK RPLPILLGAV 180
  181 TQFFLMPFCG FLLSQILGLS KAQAFGFVMT CTCPGGGGGY LFALLLEGDV TLAILMACTS 240
  241 TSLALIMMPV NSYLYSCLLG LAGVFHVPVL KIVSTLLFIL TPVSIGIVIK HRMPKKAVCL 300
  301 ERVVQPLSLT LMLVGVYLAF RMGLVFLRMA NLEVFLLGLL VPVLGFSFGY SFAKVYLLPL 360
  361 PVCKTVAIES GMLNSFLALA IIQLSFPQSK AYEASVAPFT VAMCSSCEML LLLLVYKAKK 420
  421 RPLLSTENEK APLV