YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SL9A8_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.97
Transmembrane Helix	54	74	0.94
Non-Cytoplasmic	75	79	0.83
Transmembrane Helix	80	101	0.89
Cytoplasmic	102	117	0.84
Transmembrane Helix	118	137	0.89
Non-Cytoplasmic	138	147	0.85
Transmembrane Helix	148	171	0.92
Cytoplasmic	172	184	0.89
Transmembrane Helix	185	207	0.90
Non-Cytoplasmic	208	256	0.87
Transmembrane Helix	257	280	0.89
Cytoplasmic	281	287	0.76
Transmembrane Helix	288	307	0.69
Non-Cytoplasmic	308	309	0.53
Transmembrane Helix	310	331	0.80
Cytoplasmic	332	344	0.68
Transmembrane Helix	345	367	0.86
Non-Cytoplasmic	368	373	0.64
Transmembrane Helix	374	398	0.85
Cytoplasmic	399	410	0.69
Transmembrane Helix	411	433	0.87
Non-Cytoplasmic	434	441	0.73
Transmembrane Helix	442	468	0.82
Cytoplasmic	469	575	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEFSNTTH ESFNFTLHTT LGVTTKLVLP TPAEPILPVQ TGEQAQQEEQ SSGMTIFFSL  60
   61 LVLAICIILV HLLIRYRLHF LPESVAVVSL GILMGAVIKV IEFKKLANWK EEEMFRPNMF 120
  121 FLLLLPPIIF ESGYSLHKGN FFQNIGSITL FAVFGTAISA FVVGGGIYFL GQADVISKLN 180
  181 MTDSFAFGSL ISAVDPVATI AIFNALHVDP VLNMLVFGES ILNDAVSIVL TNTAEGLTRK 240
  241 HMSDVSGWQT FSQALGYFLK MFFGSAALGT LTGLISALVL KHIDLRKTPS LEFGMMIIFA 300
  301 YLPYGLAEGI SLSGIMAILF SGIVMSHYTH HNLSPVTQIL MQQTLRTVAF LCETCVFAFL 360
  361 GLSIFSFPHK FEISFVIWCI VLVLFGRAVN IFPLSYLLNF FRDHKITPKM MFIMWFSGLR 420
  421 GAIPYALSLH LGLEPMEKRQ LIGTTTIIIV LFTILLLGGS TMPLIRLVDI EDARARRRSK 480
  481 KDVNLSKTEK MGNAIESEHL SELTEEEYEA HYIRQQDLKG FMWLDAKYLN PFFTRRLTQE 540
  541 DLHHGRIQMK SLTNKWYEEV RQGPSGSEDD EQELF