YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG31693-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	110	0.99
Transmembrane Helix	111	132	0.91
Non-Cytoplasmic	133	137	0.83
Transmembrane Helix	138	156	0.95
Cytoplasmic	157	173	0.77
Transmembrane Helix	174	193	0.88
Non-Cytoplasmic	194	210	0.76
Transmembrane Helix	211	231	0.89
Cytoplasmic	232	249	0.81
Transmembrane Helix	250	270	0.92
Non-Cytoplasmic	271	292	0.93
Transmembrane Helix	293	315	0.92
Cytoplasmic	316	386	0.99
Transmembrane Helix	387	407	0.95
Non-Cytoplasmic	408	413	0.80
Transmembrane Helix	414	430	0.96
Cytoplasmic	431	440	0.78
Transmembrane Helix	441	461	0.91
Non-Cytoplasmic	462	492	0.89
Transmembrane Helix	493	515	0.87
Cytoplasmic	516	531	0.86
Transmembrane Helix	532	552	0.91
Non-Cytoplasmic	553	572	0.76
Transmembrane Helix	573	595	0.91
Cytoplasmic	596	607	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITVMPNKTA MTKVEPPNNA LKVTLHGPVQ SNGADGVDLR LEWRSSDLNV TYRRTEVWNI  60
   61 GISNDDTAYA KVSRNFMVKR TGGADSQAVI SLESKRNSPI SLHVVIDTNP MVTDMCLVCA 120
  121 GLLILGLYML IIFDVIDHTF AALIIATTAV AILAILEHRP SMRAIVSFVN FEPLMLLFGL 180
  181 MTIVDIMATT GVFDFLVVWT YRISRGRPWP LIFFLSMLTA FLSAFLNSDI MALSLTPITI 240
  241 RLCEEMSLRT SYVLVVMAIF ADMGGALTPL GNPPNAIVTT SPVAVAEGVD FAHFIIHMMP 300
  301 GVLAAMFVVF GIIYVTHRKS IFVLDQNQLD LMEERARGKK PPSQETLDRI ALLKGSLPGK 360
  361 YWLRPVEGYP ETLAELEASS RILDKPLLVR CCIALIFAFL CMLLHSIPKV ADGASLGWVT 420
  421 LLAAFLLIIL DDKNDLNATL GIIQWTILLF IAALFVLSEA VDQLGFFEWL GDRTVGFLRS 480
  481 LEPQNQIAVT TMVILWTTAL LTIFIDNAAV TIFMLKFSIE MASNDDIPLP PMFWALTFGA 540
  541 CFGGNGSLFG AVSNEIIALI ALQHGYKISF WHFFAIGFPL MLVTMVIGSG YLLIAHSVLS 600
  601 WNLHLVR