YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or98b-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTDKFLRLQ SALFRLLGLE LLHEQDVGHR YPWRSICCIL SVASFMPLTI AFGLQNVQNV  60
   61 EQLTDSLCSV LVDLLALCKI GLFLWLYKDF KFLIGQFYCV LQTETHTAVA EMIVTRESRR 120
  121 DQFISAMYAY CFITAGLSAC LMSPLSMLIS YQRTGELQPK FPFPSVYPWD NMKLSNYIIS 180
  181 YFWNVCAALG VALPTVCVDT LFCSLSHNLC ALFQIARHKM MHFEGRNTKE THENLKHVFQ 240
  241 LYALCLNLGH FLNEYFRPLI CQFVAASLHL CVLCYQLSAN ILQPALLFYA AFTAAVVGQV 300
  301 SIYCFCGSSI HSECQLFGQA IYESSWPHLL QENLQLVSSL KIAMMRSSLG CPIDGYFFEA 360
  361 NRETLITVSK AFIKVSKKTP QVND

Type	Start	End	Confidence
Cytoplasmic	1	32	0.95
Transmembrane Helix	33	54	0.88
Non-Cytoplasmic	55	65	0.77
Transmembrane Helix	66	87	0.84
Cytoplasmic	88	125	0.93
Transmembrane Helix	126	149	0.88
Non-Cytoplasmic	150	178	0.94
Transmembrane Helix	179	211	0.70
Cytoplasmic	212	258	0.90
Transmembrane Helix	259	279	0.84
Non-Cytoplasmic	280	285	0.73
Transmembrane Helix	286	307	0.88
Cytoplasmic	308	384	0.83