YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85860052, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKRKSKLQE YIEAIVIALI VAFFIRTFVI QAYKIPSGSM KPTLLIGDHI LVNKFIYGIK  60
   61 VPHFRNTLIS IKEPKKGDIV VFIYPEDRTK DFIKRVIATS GDTVEIRNKK IYLNGRLYEE 120
  121 SHGVYTDQFV IPGSIQPRDN FGPVTVPPSS IFVMGDNRDQ SYDSRFWGFV DLKDVLGKAF 180
  181 IIYWSWDRED HGVRWNRFGN ILH

Type	Start	End	Confidence
Cytoplasmic	1	10	0.85
Transmembrane Helix	11	30	0.85
Non-Cytoplasmic	31	203	0.89