YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85861099
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TMDLRRWFPT LYTQSKDSPV RSRDATLYLL RCVFLMGVRK PPAKFFVAYV LWSFALNFCS  60
   61 TFYQPIGFLT GYISHLSEFS PGEFLTSLQV AFNAWSCSTK VLIVWALVKR FDEANNLLDE 120
  121 MDRRITDPGE RLQIHRAVSL SNRIFFFFMA VYMVYATNTF LSAIFIGRPP YQNYYPFLDW 180
  181 RSSTLHLALQ AGLEYFAMAG ACFQDVCVDC YPVNFVLVLR AHMSIFAERL RRLGTYPYES 240
  241 QEQKYERLVQ CIQDHKVILR FVDCLRPVIS GTIFVQFLVV GLVLGFTLIN IVLFANLGSA 300
  301 IAALSFMAAV LLETTPFCIL CNYLTEDCYK LADALFQSNW IDEEKRYQKT LMYFLQKLQQ 360
  361 PITFMAMNVF PISVGTNISV TKFSFSVFTL VKQMNISEKL AKSEMEE

Type	Start	End	Confidence
Cytoplasmic	1	44	0.98
Transmembrane Helix	45	67	0.89
Non-Cytoplasmic	68	84	0.88
Transmembrane Helix	85	108	0.79
Cytoplasmic	109	143	0.94
Transmembrane Helix	144	167	0.91
Non-Cytoplasmic	168	195	0.86
Transmembrane Helix	196	219	0.65
Cytoplasmic	220	267	0.82
Transmembrane Helix	268	294	0.78
Non-Cytoplasmic	295	299	0.49
Transmembrane Helix	300	321	0.67
Cytoplasmic	322	407	0.61