YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66564779
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEHENTNAK IHARYFYCIS NEQITQTWNC TCVLCHISIH SNLYVILGLI LMFLTISSTS  60
   61 WLFVICIDMT LVITRFRSTL PTDTNQQQER KKFLIYAICT WTSSLLPTVL ACVADLTTLL 120
  121 PISSPIRPNF QRFNDASEVI AYSYENRKAT VPSCYTDSQN VIDFLVVMDY KIIGYLATIL 180
  181 TVTHAGIIGP SAGIITPSGA TVAAALPPTA AVVRTENFDP NPQYSFSYSV ADGLTGDNKA 240
  241 QEETRNGDVV QGSYSLIEPD GSRRVVSYAA DPINGFNAVV QKDPSITVKT AIAATPVAPV 300
  301 AAAVRPVVAS PVIARPTSVI ATAAPAVAVR PQAALLSTPL LRQPLLAGPA VAATNVVAAN 360
  361 TGLVGLGVGL GLRPGSLYGT QALLAGAYGT GGIVKVH

Type	Start	End	Confidence
Non-Cytoplasmic	1	45	0.61
Transmembrane Helix	46	72	0.83
Cytoplasmic	73	92	0.85
Transmembrane Helix	93	117	0.81
Non-Cytoplasmic	118	172	0.87
Transmembrane Helix	173	195	0.57
Cytoplasmic	196	344	0.63
Transmembrane Helix	345	370	0.65
Non-Cytoplasmic	371	376	0.51
Transmembrane Helix	377	394	0.46
Cytoplasmic	395	397	0.47