YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66554647
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPEAFLDMA NQVIKLKMFP YFDIAHCVLC ALHVREDLGP GAQAFSRKHP LSCWLSTMLV  60
   61 VFASGMLCNG LLGEPILAPL KNTPQVIVAT IVWYVIFYTP FDIGYKIAKF LPVKIVCATM 120
  121 KEIYRCKKVY DGVTHAGKLY PNAYLIMVLI GTLKGNGAGF TKLFERLIRG VWTPTAMEFM 180
  181 QPSFPTKASM VASIIFVLDK KTDLISAPHA LVYFGIVIFF VYFKLSSILL GIHDPFVPFE 240
  241 NLFCALFLGG IWDSLAKLLG RGQAKDEKAD AKKKD

Type	Start	End	Confidence
Cytoplasmic	1	52	0.87
Transmembrane Helix	53	73	0.93
Non-Cytoplasmic	74	84	0.69
Transmembrane Helix	85	105	0.76
Cytoplasmic	106	209	0.76
Transmembrane Helix	210	230	0.87
Non-Cytoplasmic	231	236	0.72
Transmembrane Helix	237	256	0.81
Cytoplasmic	257	275	0.83