YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66549567
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPCSAVTLSL ATITGIIATG LLAIAFSTDN WLYTEVKRAQ IQQYAAKHAE QNHLVEQMNT  60
   61 KYYYYTRTQG LFRICYPKER PPTVQTYLSP VETHCMNINY FIPDEENLTR GFSDDAMTRL 120
  121 HMGRSVIALF IVGFVAIFTA FWTGVVGCWK RSPGNITATA ILMLLACLLS ASAMGLWHGV 180
  181 EYYEKEKIVG EEYYQQWNNV LKDNSLISYD WSYVVAWVGV GWSLVSAILF SAAAICLRGE 240
  241 RMREEAMNMQ YLMPVYPQKQ QYAYAGYPAP AAYPGPYYHG SQYGPYNY

Type	Start	End	Confidence
Cytoplasmic	1	6	0.63
Transmembrane Helix	7	26	0.68
Non-Cytoplasmic	27	125	0.97
Transmembrane Helix	126	146	0.95
Cytoplasmic	147	155	0.78
Transmembrane Helix	156	177	0.90
Non-Cytoplasmic	178	213	0.96
Transmembrane Helix	214	237	0.91
Cytoplasmic	238	288	0.96