YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66548818
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	306	0.96
Transmembrane Helix	307	326	0.92
Non-Cytoplasmic	327	336	0.77
Transmembrane Helix	337	356	0.94
Cytoplasmic	357	375	0.84
Transmembrane Helix	376	400	0.78
Non-Cytoplasmic	401	471	0.93
Transmembrane Helix	472	492	0.93
Cytoplasmic	493	502	0.84
Transmembrane Helix	503	523	0.94
Non-Cytoplasmic	524	547	0.93
Transmembrane Helix	548	571	0.88
Cytoplasmic	572	582	0.80
Transmembrane Helix	583	604	0.89
Non-Cytoplasmic	605	641	0.91
Transmembrane Helix	642	663	0.87
Cytoplasmic	664	681	0.85
Transmembrane Helix	682	704	0.84
Non-Cytoplasmic	705	717	0.81
Transmembrane Helix	718	741	0.92
Cytoplasmic	742	759	0.95
Transmembrane Helix	760	780	0.95
Non-Cytoplasmic	781	800	0.90
Transmembrane Helix	801	823	0.88
Cytoplasmic	824	888	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNATDSNSGV NGNDSNNTIA AKTNAHGNSV RLQSVIGKQS SCVRKMSTMP EEEDASDDMD  60
   61 PDVIRIGNQH HYQHHHDADS DSPVEERGRL LSITDSTITA HHRKIAITPS SSSNLHHCNG 120
  121 LKKAIPRNDS GNSIHERAYS RLQQSRSGDQ VGQPEARLLN RDNPQGILRS SARGIDSHSG 180
  181 GRYRCSSVRS VKSNPTMDEH HHQYHPPAAS WASIVFSDGN GQTHVRTLPD SVSIRSLASI 240
  241 GMGSSNGRKL TIRRVLTSPS ELLNMVHPPP SFEDDLSVCT SFDDAEDDAQ DPGDYRQSRR 300
  301 PHWANKMQFV LACIGYSVGL GNIWRFPYLC YKSGGGVFLV PYFLILIVCG VPLLYMELSI 360
  361 GQFTRRGPIG ALGQICPLFK GAGLSSVVIS FLMSTYHNVI IAYAIYYFFT AFRAKQPWSD 420
  421 CENSWNTLAC WLPTYSGIDN RTRPNASRTP AEEFFDNKVL QISNGIEESG PLRWELIACL 480
  481 ITAWIMVYFS VWKSIKSSAQ VRYLTATLPF LLIVVFLMRS LTLEGADKGL QFFFHPRWEL 540
  541 LADAKVWIYA TAQIFNSVGI AFGSMICFAS YNKFHNTILI DTMAVSLING FSSLLVGIFS 600
  601 FATIGNIALE QNMSVEDVLT DGPGLVFVLY PQALAKMPAS QVWAVLFFFM LVCLSLNSQF 660
  661 AIVEVVVTSI QDGFPKWVKR HLTCHEMLVL LICVISFLFG LPNISQGGIY FFQLIDHYAA 720
  721 SISIMFLAFF EVIAISWFYG VRRLCNNVKE MTGRVPSSYF RFCWLIAAPF LIMAVWVFSL 780
  781 IDYEPPTYHN GEYKYPWWAE AIGWGIASLS LICIPAFAIY EFIRANGNTC AEKLRNSIKP 840
  841 HFEACKICGQ EYCNESMHNF EEDMIKEQQD PNSPIQLSIS PPLSKSQT