YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66547077
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVQKQYKVT PRSSEDKNQT PPTLLSSLRS VLFVIGTVVI GFAAFCNSLT WHLQRFWGAS  60
   61 GDFWQAQWDK ILDKLGDDPG TLWVYGSIGL TFFVYWFFGG IYMILDITNR PAVLRRYKIQ 120
  121 PGTNEPVDTR ELFKVIAQVL FNQTIVGLPL AYISYHLMEW RGYPPVRELP TFHWVLVEIA 180
  181 FHILCEEIGF YYSHRFLHSR YLYKYIHKQH HEWTAPIAIT SLYCHPLEHI GSNLLPPFLG 240
  241 VYIIGSHVAT AWLWFSLAIL STLNAHSGYH LPFFPSPEAH DFHHLKFNQC FGVLGVLDRI 300
  301 HGTDTHFRNS RAYQRHVMML SFTPPREAFP DEVKYKSK

Type	Start	End	Confidence
Cytoplasmic	1	30	0.96
Transmembrane Helix	31	53	0.92
Non-Cytoplasmic	54	84	0.94
Transmembrane Helix	85	105	0.90
Cytoplasmic	106	138	0.86
Transmembrane Helix	139	156	0.80
Non-Cytoplasmic	157	171	0.75
Transmembrane Helix	172	192	0.72
Cytoplasmic	193	212	0.73
Transmembrane Helix	213	229	0.47
Non-Cytoplasmic	230	237	0.52
Transmembrane Helix	238	263	0.75
Cytoplasmic	264	338	0.69