YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66546970, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTISDNQCT SVRDFYKDRS IFITGGTGFM GKVLVEKLLR SCPGIKNIYI LMRPKKSQDI  60
   61 QQRLQKLLDV PLFDKLRRDT PDELLKIIPI AGDVTEHELG ISEADQNVII RDVSIVFHSA 120
  121 ATVKFDEPLK RSVHINMIGT KQLLNLCHRM HNLEALIHVS TAYCNCDRYD VAEEIYPVSA 180
  181 EPEEIMALTK LMDSQMIDNI TPTLIGNRPN TYTFTKALTE RMLQSECGHL PIAIVRPSIV 240
  241 LSSFREPVSG WVDNLNGPTG IVAAAGKGFF RSMLCQKNMV ADLVPVDIVI NLMICTAWRT 300
  301 ATNRTKTIPI YHCCTGQQNP ITWQQFVELI LKYNRMHPPN DTIWWPDGKC HTFAIVNNVC 360
  361 KLFQHLLPAH ILDFIFRLRG KPAIMVGLHE KIDKAVKCLE YFTMQQWNFR DDNVRQLSGE 420
  421 LSPEDRQIFM FDVKQIDWPS YLEQYILGIR QFIIKDSPET LPAARSHIKK LYWIQKVVEF 480
  481 GMLLVVLRFL LLRIPMAQSA CFTLLSAILR MCRMIV

Type	Start	End	Confidence
Non-Cytoplasmic	1	488	0.89
Transmembrane Helix	489	512	0.61
Cytoplasmic	513	516	0.64