YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66534431
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVNKQDYHR ASNAVVFGGV ITYIAGLLLV MAFTSPYWIE SYEETFSNFK HMGLWEYCFE  60
   61 QFRYPYYQFD KQFDGCHHIF SEEYYVIREW LLPGWLMIVQ TFVTLALLFS FFAQVVIALT 120
  121 LVRWPLKFVL NYEWILSASA FSCCAIAGTV LFLAVSIFGG QCWRRDWLMY PNFNHLSWSY 180
  181 GLAVISFMFH WLAAFFLYLD AKAGYRLRKQ SSNLVMQMQP NLQSHQGLAR GGYI

Type	Start	End	Confidence
Cytoplasmic	1	13	0.90
Transmembrane Helix	14	34	0.92
Non-Cytoplasmic	35	97	0.95
Transmembrane Helix	98	122	0.87
Cytoplasmic	123	133	0.87
Transmembrane Helix	134	158	0.89
Non-Cytoplasmic	159	177	0.90
Transmembrane Helix	178	199	0.96
Cytoplasmic	200	234	0.98