YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66518336
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	82	0.86
Transmembrane Helix	83	105	0.75
Non-Cytoplasmic	106	219	0.97
Transmembrane Helix	220	239	0.92
Cytoplasmic	240	250	0.79
Transmembrane Helix	251	271	0.91
Non-Cytoplasmic	272	279	0.78
Transmembrane Helix	280	298	0.83
Cytoplasmic	299	307	0.66
Transmembrane Helix	308	331	0.89
Non-Cytoplasmic	332	342	0.81
Transmembrane Helix	343	365	0.89
Cytoplasmic	366	372	0.83
Transmembrane Helix	373	396	0.83
Non-Cytoplasmic	397	414	0.83
Transmembrane Helix	415	436	0.93
Cytoplasmic	437	446	0.66
Transmembrane Helix	447	464	0.85
Non-Cytoplasmic	465	467	0.79
Transmembrane Helix	468	488	0.85
Cytoplasmic	489	503	0.86
Transmembrane Helix	504	524	0.85
Non-Cytoplasmic	525	532	0.81
Transmembrane Helix	533	556	0.90
Cytoplasmic	557	570	0.90
Transmembrane Helix	571	590	0.89
Non-Cytoplasmic	591	600	0.70
Transmembrane Helix	601	620	0.76
Cytoplasmic	621	1107	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLAGRLCVV FALYPPASSP NDLQEDRRMK LWEQPCREPN ALKGSSWLEV SSDGTEGDSA  60
   61 PVDERERAAR SPRSAPQSPC HVVMATRAVT STMIAFVLIL LVAGWPTGGQ TGLVKFYESV 120
  121 PDHLQPDRRI PINDYAMHGP IVDDHELPRD LREPYPGKSF GPMGPIDGSL PDDVSFRSLS 180
  181 SGQEKGANSI ELLSSHAVEK VEKHKPEYKI MSVEFHRVET PFVIGIWIFF ASIAKIGFHM 240
  241 TPKLSKIFPE SCLLIVVGVV VGVLLFQASS VHVSPLTPDT FFLYMLPPII LDAGYFMPNR 300
  301 LFFDHLGTIL LFAVVGTIFN TLSIGASLWV LGKSGLFGFE TPLLQMFLFS ALISAVDPVA 360
  361 VLAVFEEIHV NEILYIVVFG ESLLNDAVTV VLYHMFEAYN EIGPTEILYT DVLSGLASFF 420
  421 VVAIGGTIIG VIWGFGTGFV TRFTHQVRVI EPIFIFVMAY LAYLNAEIFH MSSILAITFC 480
  481 GITMKNYVEA NISHKSHTTV KYTMKMLSSS SETIIFMFLG VATVNNHHDW NTWFVVMTIV 540
  541 FCSIYRIVGV IFLTALANQF RLHKLNKVEK FVMSYGGLRG AVAFALVLLI DPKHVSLQPM 600
  601 FVTTTIAVIY FTVFIQGITI KPLVKILNVK RAEKKKPTMN ERIHERIIDH VMAGIEDILG 660
  661 KHGNYHVRDK FKRFDNKFIR PYLVRNHYGA EPKILETYSK LAMKDALDYI RRNASTIGNI 720
  721 SGTESMSAIF RNYSNTGQFN GSPSCSQLEA GWNIDLQELE YNPSKKDLTD ARIHHLLAEE 780
  781 LCKPYKRHRR LSYSRHAVND RDLSTQVNYK MHMNIRRMMG EHKHRHKRSK KLLKDGKQNH 840
  841 VSFPEFQQNG STKLFTQDYI NGVLYELENG DTSKPSSKED WDSAITFTAR TSAAGKDNSG 900
  901 VSCRSVSLNV KRDERESYRV TTPTATETML PWKREDDYDS GHPIKQNEFP AWCSNKEYLA 960
  961 YSSPSATFLG GIEQPKVQSV IGLFRRESVC TPDGIDCQET VDERDEYTLT GTEQTEDSPT1020
 1021 KTFSEYEKDN KKGPTRRVSM MELGSMEKSH SDKCTDDGSH SLPECWNAQR VRMTSFPYSA1080
 1081 QVPSLSTALI TSSSESSEEI DEEEEKA