YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66515857
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAMKSSGSP GTARVLPVLS HFKYEHFIAG ISGGVVSTLM LHPLDLIKTR FAVSDGHSRV  60
   61 GPQYKSLKSA VMQIVKTEGV RGLYRGVTPN VLGSGGAWGC YFFFYNTIKT WIQGGNSRKP 120
  121 LGPSMHMFAA ADAGILTLVM TNPLWVVKTR LCLQYMDDKH LPETLRYNGM IDAIKKIYRT 180
  181 EGVRGLYRGF VPGMFGVSHG AIQFMVYEEL KNWYNNYLNV PIDTKLSTWE YIFFAAVSKL 240
  241 IAAASTYPYQ VVRARLQDHH HNYSGSIHCI QSIWRSEGIR GFYKGLTPYL LHVTPNICLI 300
  301 ITFNLFKFIF ENKFEGGNGF YKGLSANLTR VTPATVITFV VYENVSHYLQ HRKTRDEERT 360
  361 LPILMKKLEE N

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.49
Transmembrane Helix	26	42	0.59
Cytoplasmic	43	85	0.84
Transmembrane Helix	86	105	0.86
Non-Cytoplasmic	106	125	0.82
Transmembrane Helix	126	146	0.88
Cytoplasmic	147	184	0.93
Transmembrane Helix	185	207	0.76
Non-Cytoplasmic	208	230	0.80
Transmembrane Helix	231	249	0.59
Cytoplasmic	250	371	0.53