YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66512768
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.98
Transmembrane Helix	31	54	0.90
Non-Cytoplasmic	55	90	0.91
Transmembrane Helix	91	107	0.57
Cytoplasmic	108	116	0.44
Transmembrane Helix	117	140	0.84
Non-Cytoplasmic	141	144	0.41
Transmembrane Helix	145	165	0.56
Cytoplasmic	166	176	0.90
Transmembrane Helix	177	199	0.91
Non-Cytoplasmic	200	208	0.76
Transmembrane Helix	209	230	0.91
Cytoplasmic	231	250	0.92
Transmembrane Helix	251	273	0.93
Non-Cytoplasmic	274	291	0.96
Transmembrane Helix	292	311	0.92
Cytoplasmic	312	321	0.80
Transmembrane Helix	322	341	0.94
Non-Cytoplasmic	342	347	0.69
Transmembrane Helix	348	370	0.88
Cytoplasmic	371	380	0.67
Transmembrane Helix	381	404	0.80
Non-Cytoplasmic	405	409	0.65
Transmembrane Helix	410	431	0.86
Cytoplasmic	432	581	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTIPILNIE LSELKEIVWA KLQEPKAQRK LVLIIVSIAL LLDNMLYMVI VPIIPDYLKY  60
   61 VGAFGDVEEE DEVNATGTPS HHGQDSATGV LFASKAIVQL MVNPFSGALI DRIGYDIPMM 120
  121 IGLCIMFLST AVFACGRSYG VLFFARSLQG VGSAFADTSG LAMIADRYTE EAERSKALGI 180
  181 ALAFISFGCL VAPPFGGALY QFAGKEVPFL ILAFISLADG VMLLLVMKPV KEQVKQRQGE 240
  241 MRQTIPIWRL LMDPYIAVCA GALMMSNVAL AFLEPTISLW MEDNITRDNW KMGMIWLPAF 300
  301 FPHVFGVMIT VKMAKQYPQQ QWLMAASGLA LEGMCCFIIP FCSSYGALMI PLCGICFGIA 360
  361 LIDTALLPTL GYLVDVRYVS VYGSIYAIAD ISYSVAYAVG PIIAGGVVEA IGFTALNIGI 420
  421 AFSNLLYAPV LMYLRHIYDF KPFQDEADVL MQNPPDKEYQ TYVLQEQRPL SGEVGNHLNQ 480
  481 ARMETNVDQE QNYQAGQNYD YGQNINAAGY TQPGYEQQPP VYEQQPTANY QQPVAYTQQR 540
  541 MTYAQQEQAG GHQVDVNPFR RPGNVDQKPS GDSNPFRQGM Y