YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66512639
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	314	0.99
Transmembrane Helix	315	335	0.93
Non-Cytoplasmic	336	373	0.95
Transmembrane Helix	374	395	0.92
Cytoplasmic	396	403	0.86
Transmembrane Helix	404	424	0.94
Non-Cytoplasmic	425	430	0.83
Transmembrane Helix	431	452	0.91
Cytoplasmic	453	463	0.79
Transmembrane Helix	464	484	0.89
Non-Cytoplasmic	485	493	0.81
Transmembrane Helix	494	515	0.90
Cytoplasmic	516	575	0.94
Transmembrane Helix	576	595	0.76
Non-Cytoplasmic	596	615	0.79
Transmembrane Helix	616	637	0.91
Cytoplasmic	638	645	0.83
Transmembrane Helix	646	667	0.94
Non-Cytoplasmic	668	675	0.79
Transmembrane Helix	676	700	0.84
Cytoplasmic	701	711	0.82
Transmembrane Helix	712	733	0.91
Non-Cytoplasmic	734	741	0.73
Transmembrane Helix	742	759	0.95
Cytoplasmic	760	793	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSRGFKPI NQLWQSAAVS TDPDSECLYE EISGLSGSQD TEPGPVGGSS WWRQGKGRSE  60
   61 RSIASGGHTG TTGRKKASKS VGTSARSRSR SADRPPTTGR QGDIIRVEEE QYASRRSYVE 120
  121 PGTGAVLPPP VTGLKLTRGR ATSTVARYLH SASTNTGHYH HHHHGLHGQY PPGGRPTGRH 180
  181 HQHHHPSRGS FSNETQEEVQ EDDEATLREL LVSLQKQVSV MSMNLSAKLD ELQRGDRQLE 240
  241 TTVALCEIRT QLQELTKSVE SCQSEVSEVK RDMVAIKHEL DTVQQVKEEI EELREYVDRL 300
  301 EEHSHRRKLR LLEQGLTLFL SYAILAAVLG MLQFGYNTGV INAPEVNIEN FMKDVYKDRY 360
  361 GEDISDDYVK RLYSVAVSIF AIGGMLGGFS GGIIANRFGR KGGLLLNNVL GIVGGCLMGF 420
  421 TKMAHSYEML FFGRFIIGVN CGLNTSLVPM YISEIAPLNL RGGLGTVNQL AVTVGLLVSQ 480
  481 VLGIEQILGT DEGWPVLLLL AICPAILQLL LLPVCPESPR YLLITKQWEE EARKALRRLR 540
  541 ASNQVEEDIE EMRAEERAQQ AESRISMTEL ICSPTLRAPL IIGVVMQLSQ QLSGINAVFY 600
  601 YSTNLYTSSG LTEESAKFAT IGIGSIMVVM TLVSIPLMDR TGRRTLHLYG LGGMFIFSIF 660
  661 ITISFLIKEM IDWMSYLSVV STLFFVVFFA VGPGSIPWMI TAELFSQGPR PAAMSIAVLV 720
  721 NWIANFVVGI GFPSMKTSLE NYTFLPFSAF LAIFWIFTYK QVPETKNKTF EEILALFRHG 780
  781 NDRSSLRDSR LYG