YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62858123
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPELLLDS NIRLWVVLPI VFITFFVGMI RHYVSILLQS DKKLTQEQVS DSQVLIRSRV  60
   61 LRENGKYISK QSFLMRKFFF NNSEDGFFKK TKRKVVPPSP MTDPTMLTDM MKGNVTNVLP 120
  121 MILIGGWINM TFSGFVTTKV PFPLTLRFKP MLQQGIELLS LDASWVSSAS WYFLNVFGLR 180
  181 SIYSLILGQD NAADQSRVMQ EQMTGAAMAM PADTNKAFKT EWEALELTDH QWALEDLEED 240
  241 LMSKDLNLEG MFKKEVQTSI F

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.59
Transmembrane Helix	12	34	0.88
Cytoplasmic	35	114	0.60
Transmembrane Helix	115	138	0.74
Non-Cytoplasmic	139	160	0.61
Transmembrane Helix	161	179	0.51
Cytoplasmic	180	261	0.58