YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62858679
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVHERSHTG GHTCQCNHGS EKKAPATGKV HSEGGSARMS LLILVSIFLC AASIMFLVYK  60
   61 HFPQLSEEER EKIKVPRDMD DAKALGKVLS KYKDTFYVEV LVAYFTTYIF LQTFAIPGSI 120
  121 FLSILSGFLY PFPLALFLVC LCSGLGASFC YLLSYLVGRP VVYKYLSDKA IKWSQQVERH 180
  181 RDHLINYIIF LRITPFLPNW FINITSPVIN VPLKVFFLGT FIGVAPPSFV AIKAGTTLYQ 240
  241 LTTAGEAVSW NSVIILMVLA VLSILPAIFQ KKLKKKFE

Type	Start	End	Confidence
Cytoplasmic	1	38	0.69
Transmembrane Helix	39	59	0.92
Non-Cytoplasmic	60	103	0.68
Transmembrane Helix	104	128	0.78
Cytoplasmic	129	133	0.50
Transmembrane Helix	134	157	0.88
Non-Cytoplasmic	158	182	0.67
Transmembrane Helix	183	203	0.68
Cytoplasmic	204	212	0.67
Transmembrane Helix	213	235	0.79
Non-Cytoplasmic	236	246	0.85
Transmembrane Helix	247	269	0.90
Cytoplasmic	270	278	0.91