YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62752962
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERKEGRGK GKGKKKDRGS RGKPGPAEGD PSPALPPRLK EMKSQESAAG SKLVLRCETS  60
   61 SEYSSLRFKW FKNGNELNRK NKPENIKIQK KPGKSELRIN KASLADSGEY MCKVISKLGN 120
  121 DSASANITIV ESNATSTSTT GTSHLIKCAE KEKTFCVNGG ECFTVKDLSN PSRYLCKCPN 180
  181 EFTGDRCQNY VMASFYKHLG IEFMEAEELY QKRVLTITGI CIALLVVGIM CVVAYCKTKK 240
  241 QRQKLHDRLR QSLRSERSNL VNIANGPHHP NPPPENVQLV NQYVSKNVIS SEHIVEREVE 300
  301 TSFSTSHYTS TAHHSTTVTQ TPSHSWSNGH TESVISESNS VIMMSSVENS RHSSPAGGPR 360
  361 GRLHGLGGPR DNSFLRHARE TPDSYRDSPH SERHNLIAEL RRNKAYRSKC MQIQLSATHL 420
  421 RPSSITHLGF IL

Type	Start	End	Confidence
Non-Cytoplasmic	1	213	0.73
Transmembrane Helix	214	236	0.87
Cytoplasmic	237	432	0.66